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Report for CCDS40007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40007.1 Public Mus musculus 7 Cpeb1 23 108 98 CCDS HistoryNCBI Gene:12877Re-query CCDS DB by CCDS ID:40007.1Re-query CCDS DB by GeneID:12877See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098331.9 ENSMUSP00000095936.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098331.9Link to Ensembl Protein Viewer:ENSMUSP00000095936.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098331Re-query CCDS DB by Protein ID:ENSMUSP00000095936
Original member Current member NCBI NM_007755.5 NP_031781.1 Accepted alive Link to Nucleotide Sequence:NM_007755.5Link to Protein Sequence:NP_031781.1Re-query CCDS DB by Nucleotide ID:NM_007755Re-query CCDS DB by Protein ID:NP_031781Link to BLAST:NP_031781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031781.1 561 P70166 561 100% 0 0

Chromosomal Locations for CCDS 40007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81348341 81348439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81349792 81349872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81350345 81350439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81351744 81351942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81355875 81356011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81356894 81356998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81357305 81357418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81359729 81359981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81361586 81361809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81372012 81372200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81436203 81436377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81454634 81454648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCTTTCTCTCTGGAAGAAGCAGCAGGAAGAATAAAGGATTGCTGGGACAACCAAGAAGTTCCTGCAC
TCTCTACATGTAGCAATGCCAATATCTTTCGAAGGATAAATGCCATTTTGGATGATTCACTGGACTTCAG
TAAAGTCTGTACAACACCTATAAATCGAGGAATTCATGATCAGTTGCCAGACTTCCAGGACTCTGAAGAA
ACAGTTACAAGCAGGATGCTTTTCCCCACCTCTGCGCAAGAATCTCCCCGTGGCCTCCCAGATGCAAATG
GCTTGTGCCTTGGCCTGCAGTCCCTCAGTCTGACTGGCTGGGACCGACCCTGGAGCACCCAGGACTCAGA
CTCCTCAGCCCAGAGCAGCACACAGTCAGTATTAAGCATGCTCCAAAATCCACTGGGAAATGTCTTAGGA
AAAGCCCCCTTGAGCTTCCTGTCTCTGGATCCCCTTGGGTCTGACTTGGACAAGTTCCCAGCACCCTCAG
TTAGAGGATCTCGCCTGGACACCCGGCCCATCCTGGACTCCCGTTCTAGCAGCCCCTCTGACTCAGACAC
GAGTGGCTTCAGCTCTGGATCAGACCATCTCTCAGATTTGATTTCAAGCCTTCGCATTTCCCCTCCTCTG
CCCTTTCTTTCTATGACGGGAAATGGTCCCAGAGACCCTCTAAAGATGGGCGTTGGGTCCCGAATGGACC
AAGAACAAGCTGCTCTTGCTGCAGTTGCTCCCTCTCCAACCAGTGCTCCAAAGAGATGGCCAGGAGCTTC
TGTGTGGCCATCTTGGGACCTTCTTGGAGCTCCTAAAGACCCATTCAGCATAGAGAGAGAGGCTAGACTC
CACCGGCAGGCTGCAGCTGTGAATGAAGCTACGTGTACCTGGAGTGGCCAGCTTCCTCCCCGGAACTATA
AGAACCCCATCTACTCATGCAAGGTGTTCCTAGGAGGCGTTCCTTGGGATATTACAGAAGCTGGATTGGT
TAACACCTTCCGTGTTTTTGGCTCTCTGAGTGTGGAGTGGCCTGGTAAGGATGGCAAGCACCCCCGGTGT
CCTCCCAAAGGTAATATGCCTAAAGGGTATGTGTATTTGGTGTTTGAACTAGAGAAGTCCGTCCGGGCCT
TGCTTCAGGCTTGTTCTCATGACCCGCTGAGCCCAGATGGCCTGAGTGAATATTATTTCAAGATGTCCAG
CCGAAGGATGCGCTGCAAAGAGGTACAGGTAATCCCTTGGGTCTTGGCTGACAGCAACTTTGTCTGGAGC
CCATCTCAGAGGCTGGATCCCAGCAGGACGGTGTTTGTTGGTGCCTTGCACGGGATGCTCAATGCTGAGG
CTCTGGCTGCCATCTTGAATGACCTATTTGGTGGAGTGGTGTATGCTGGGATTGACACAGATAAGCACAA
GTACCCCATTGGGTCTGGTCGTGTGACTTTCAATAACCAACGTAGTTATCTGAAAGCAGTCACCGCTGCT
TTTGTGGAGATCAAAACCACCAAGTTTACCAAGAAGGTTCAGATTGACCCCTATCTAGAAGATTCTCTGT
GTCTTATCTGCAGCTCACAACCTGGTCCTTTCTTCTGCCGAGATCAGGTCTGCTTCAAGTACTTTTGCAG
AAGCTGCTGGCACTGGCGACACAGCATGGAAGGCCTACGCCACCATAGCCCCCTAATGAGGAACCAGAAG
AACTGA

Translation (561 aa):
MAFSLEEAAGRIKDCWDNQEVPALSTCSNANIFRRINAILDDSLDFSKVCTTPINRGIHDQLPDFQDSEE
TVTSRMLFPTSAQESPRGLPDANGLCLGLQSLSLTGWDRPWSTQDSDSSAQSSTQSVLSMLQNPLGNVLG
KAPLSFLSLDPLGSDLDKFPAPSVRGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPL
PFLSMTGNGPRDPLKMGVGSRMDQEQAALAAVAPSPTSAPKRWPGASVWPSWDLLGAPKDPFSIEREARL
HRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRC
PPKGNMPKGYVYLVFELEKSVRALLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVWS
PSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVTAA
FVEIKTTKFTKKVQIDPYLEDSLCLICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK
N


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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