NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42874.1 Public Homo sapiens 20 PTPRT 24 110 108 CCDS HistoryNCBI Gene:11122Re-query CCDS DB by CCDS ID:42874.1Re-query CCDS DB by GeneID:11122See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373187.6 ENSP00000362283.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373187.6Link to Ensembl Protein Viewer:ENSP00000362283.1Re-query CCDS DB by Nucleotide ID:ENST00000373187Re-query CCDS DB by Protein ID:ENSP00000362283
Original member Current member NCBI NM_007050.6 NP_008981.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007050.6Link to Protein Sequence:NP_008981.4Re-query CCDS DB by Nucleotide ID:NM_007050Re-query CCDS DB by Protein ID:NP_008981Link to BLAST:NP_008981.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008981.4 1441 O14522-3 1441 100% 0 0

Chromosomal Locations for CCDS 42874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 42080879 42080932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42081882 42082017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42084682 42084845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42085728 42085853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42098421 42098552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42102124 42102297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42104569 42104718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42106786 42106921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42110333 42110487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42115199 42115315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42118403 42118500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42119935 42119971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42128754 42128830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42141915 42142002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42161352 42161542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42199240 42199388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42236229 42236258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42248687 42248822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42282489 42282525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42315723 42315996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42350628 42350730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42352084 42352285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42448220 42448329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42472266 42472562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42677866 42678159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42756462 42756636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42771435 42771550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42780218 42780299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42791195 42791466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42885807 42885932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43189646 43189733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4326 nt):
ATGGCGAGCCTCGCCGCGCTCGCCCTCAGCCTGCTCCTGAGGCTGCAGCTGCCGCCACTGCCCGGCGCCC
GGGCTCAGAGCGCCGCAGGTGGCTGTTCCTTTGATGAGCACTACAGCAACTGTGGTTATAGTGTGGCTCT
AGGGACCAATGGGTTCACCTGGGAGCAGATTAACACATGGGAGAAACCAATGCTGGACCAGGCAGTGCCC
ACAGGATCTTTCATGATGGTGAACAGCTCTGGGAGAGCCTCTGGCCAGAAGGCCCACCTTCTCCTGCCAA
CCCTGAAGGAGAATGACACCCACTGCATCGACTTCCATTACTACTTCTCCAGCCGTGACAGGTCCAGCCC
AGGGGCCTTGAACGTCTACGTGAAGGTGAATGGTGGCCCCCAAGGGAACCCTGTGTGGAATGTGTCCGGG
GTCGTCACTGAGGGCTGGGTGAAGGCAGAGCTCGCCATCAGCACTTTCTGGCCACATTTCTATCAGGTGA
TATTTGAATCCGTCTCATTGAAGGGTCATCCTGGCTACATCGCCGTGGACGAGGTCCGGGTCCTTGCTCA
TCCATGCAGAAAAGCACCTCATTTTCTGCGACTCCAAAACGTGGAGGTGAATGTGGGGCAGAATGCCACA
TTTCAGTGCATTGCTGGTGGGAAGTGGTCTCAGCATGACAAGCTTTGGCTCCAGCAATGGAATGGCAGGG
ACACGGCCCTGATGGTCACCCGTGTGGTCAACCACAGGCGCTTCTCAGCCACAGTCAGTGTGGCAGACAC
TGCCCAGCGGAGCGTCAGCAAGTACCGCTGTGTGATCCGCTCTGATGGTGGGTCTGGTGTGTCCAACTAC
GCGGAGCTGATCGTGAAAGAGCCTCCCACGCCCATTGCTCCCCCAGAGCTGCTGGCTGTGGGGGCCACAT
ACCTGTGGATCAAGCCAAATGCCAACTCCATCATCGGGGATGGCCCCATCATCCTGAAGGAAGTGGAATA
TCGCACCACCACAGGCACGTGGGCAGAGACCCACATAGTCGACTCTCCCAACTATAAGCTGTGGCATCTG
GACCCCGATGTTGAGTATGAGATCCGAGTGCTCCTCACACGACCAGGTGAGGGGGGTACGGGACCGCCAG
GGCCTCCCCTCACCACCAGGACCAAGTGTGCAGATCCGGTACATGGCCCACAGAACGTGGAAATCGTAGA
CATCAGAGCCCGGCAGCTGACCCTGCAGTGGGAGCCCTTCGGCTACGCGGTGACCCGCTGCCATAGCTAC
AACCTCACCGTGCAGTACCAGTATGTGTTCAACCAGCAGCAGTACGAGGCCGAGGAGGTCATCCAGACCT
CCTCCCACTACACCCTGCGAGGCCTGCGCCCCTTCATGACCATCCGGCTGCGACTCTTGCTGTCTAACCC
CGAGGGCCGAATGGAGAGCGAGGAGCTGGTGGTGCAGACTGAGGAAGACGTTCCAGGAGCTGTTCCTCTA
GAATCCATCCAAGGGGGGCCCTTTGAGGAGAAGATCTACATCCAGTGGAAACCTCCCAATGAGACCAATG
GGGTCATCACGCTCTACGAGATCAACTACAAGGCTGTCGGCTCGCTGGACCCAAGTGCTGACCTCTCGAG
CCAGAGGGGGAAAGTGTTCAAGCTCCGGAATGAAACCCACCACCTCTTTGTGGGTCTGTACCCAGGGACC
ACCTATTCCTTCACCATCAAGGCCAGCACAGCAAAGGGCTTTGGGCCCCCTGTCACCACTCGGATTGCCA
CCAAAATTTCAGCTCCATCCATGCCTGAGTACGACACAGACACCCCATTGAATGAGACAGACACGACCAT
CACAGTGATGCTGAAACCCGCTCAGTCCCGGGGAGCTCCTGTCAGTGTTTATCAGCTGGTTGTCAAGGAG
GAGCGACTTCAGAAGTCACGGAGGGCAGCTGACATTATTGAGTGCTTTTCGGTGCCCGTGAGCTATCGGA
ATGCCTCCAGCCTCGATTCTCTACACTACTTTGCTGCTGAGTTGAAGCCTGCCAACCTGCCTGTCACCCA
GCCATTTACAGTGGGTGACAATAAGACATACAATGGCTACTGGAACCCTCCTCTCTCTCCCCTGAAAAGC
TACAGCATCTACTTCCAGGCACTCAGCAAAGCCAATGGAGAGACCAAAATCAACTGTGTTCGTCTGGCTA
CAAAAGGTGCCTCCACCCAGAATTCTAACACTGTGGAGCCAGAGAAGCAGGTGGACAACACCGTGAAGAT
GGCTGGCGTGATCGCTGGCCTCCTCATGTTCATCATCATTCTCCTGGGCGTGATGCTCACCATCAAAAGG
AGAAGAAATGCTTATTCCTACTCCTATTACTTGAAGCTGGCCAAGAAGCAGAAGGAGACCCAGAGTGGAG
CCCAGAGGGAGATGGGGCCTGTGGCCTCTGCCGACAAACCCACCACCAAGCTCAGCGCCAGCCGCAATGA
TGAAGGCTTCTCTTCTAGTTCTCAGGACGTCAACGGATTCACAGATGGCAGCCGCGGGGAGCTTTCCCAG
CCCACCCTCACGATCCAGACTCATCCCTACCGCACCTGTGACCCTGTGGAGATGAGCTACCCCCGGGACC
AGTTCCAACCCGCCATCCGGGTGGCTGACTTGCTGCAGCACATCACGCAGATGAAGAGAGGCCAGGGCTA
CGGGTTCAAGGAGGAATACGAGGCCTTACCAGAGGGGCAGACAGCTTCGTGGGACACAGCCAAGGAGGAT
GAAAACCGCAATAAGAATCGATATGGGAACATCATATCCTACGACCATTCCCGGGTGAGGCTGCTGGTGC
TGGATGGAGACCCGCACTCTGACTACATCAATGCCAACTACATTGACGGATACCATCGACCTCGGCACTA
CATTGCGACTCAAGGTCCGATGCAGGAGACTGTAAAGGACTTTTGGAGAATGATCTGGCAGGAGAACTCC
GCCAGCATCGTCATGGTCACAAACCTGGTGGAAGTGGGCAGGGTGAAATGTGTGCGATACTGGCCAGATG
ACACGGAGGTCTACGGAGACATTAAAGTCACCCTGATTGAAACAGAGCCCCTGGCAGAATACGTCATACG
CACCTTCACAGTCCAGAAGAAAGGCTACCATGAGATCCGGGAGCTCCGCCTCTTCCACTTCACCAGCTGG
CCTGACCACGGCGTTCCCTGCTATGCCACTGGCCTTCTGGGCTTCGTCCGCCAGGTCAAGTTCCTCAACC
CCCCGGAAGCTGGGCCCATAGTGGTCCACTGCAGTGCTGGGGCTGGGCGGACTGGCTGCTTCATTGCCAT
TGACACCATGCTTGACATGGCCGAGAATGAAGGGGTGGTGGACATCTTCAACTGCGTGCGTGAGCTCCGG
GCCCAAAGGGTCAACCTGGTACAGACAGAGGAGCAATATGTGTTTGTGCACGATGCCATCCTGGAAGCGT
GCCTCTGTGGCAACACTGCCATCCCTGTGTGTGAGTTCCGTTCTCTCTACTACAATATCAGCAGGCTGGA
CCCCCAGACAAACTCCAGCCAAATCAAAGATGAATTTCAGACCCTCAACATTGTGACACCCCGTGTGCGG
CCCGAGGACTGCAGCATTGGGCTCCTGCCCCGGAACCATGATAAGAATCGAAGTATGGACGTGCTGCCTC
TGGACCGCTGCCTGCCCTTCCTTATCTCAGTGGACGGAGAATCCAGCAATTACATCAACGCAGCACTGAT
GGATAGCCACAAGCAGCCTGCCGCCTTCGTGGTCACCCAGCACCCTCTACCCAACACCGTGGCAGACTTC
TGGAGGCTGGTGTTCGATTACAACTGCTCCTCTGTGGTGATGCTGAATGAGATGGACACTGCCCAGTTCT
GTATGCAGTACTGGCCTGAGAAGACCTCCGGGTGCTATGGGCCCATCCAGGTGGAGTTCGTCTCCGCAGA
CATCGACGAGGACATCATCCACAGAATATTCCGCATCTGTAACATGGCCCGGCCACAGGATGGTTATCGT
ATAGTCCAGCACCTCCAGTACATTGGCTGGCCTGCCTACCGGGACACGCCCCCCTCCAAGCGCTCTCTGC
TCAAAGTGGTCCGACGACTGGAGAAGTGGCAGGAGCAGTATGACGGGAGGGAGGGACGTACTGTGGTCCA
CTGCCTAAATGGGGGAGGCCGTAGTGGAACCTTCTGTGCCATCTGCAGTGTGTGTGAGATGATCCAGCAG
CAAAACATCATTGACGTGTTCCACATCGTGAAAACACTGCGTAACAACAAATCCAACATGGTGGAGACCC
TGGAACAGTATAAATTTGTATACGAGGTGGCACTGGAATATTTAAGCTCCTTTTAG

Translation (1441 aa):
MASLAALALSLLLRLQLPPLPGARAQSAAGGCSFDEHYSNCGYSVALGTNGFTWEQINTWEKPMLDQAVP
TGSFMMVNSSGRASGQKAHLLLPTLKENDTHCIDFHYYFSSRDRSSPGALNVYVKVNGGPQGNPVWNVSG
VVTEGWVKAELAISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCRKAPHFLRLQNVEVNVGQNAT
FQCIAGGKWSQHDKLWLQQWNGRDTALMVTRVVNHRRFSATVSVADTAQRSVSKYRCVIRSDGGSGVSNY
AELIVKEPPTPIAPPELLAVGATYLWIKPNANSIIGDGPIILKEVEYRTTTGTWAETHIVDSPNYKLWHL
DPDVEYEIRVLLTRPGEGGTGPPGPPLTTRTKCADPVHGPQNVEIVDIRARQLTLQWEPFGYAVTRCHSY
NLTVQYQYVFNQQQYEAEEVIQTSSHYTLRGLRPFMTIRLRLLLSNPEGRMESEELVVQTEEDVPGAVPL
ESIQGGPFEEKIYIQWKPPNETNGVITLYEINYKAVGSLDPSADLSSQRGKVFKLRNETHHLFVGLYPGT
TYSFTIKASTAKGFGPPVTTRIATKISAPSMPEYDTDTPLNETDTTITVMLKPAQSRGAPVSVYQLVVKE
ERLQKSRRAADIIECFSVPVSYRNASSLDSLHYFAAELKPANLPVTQPFTVGDNKTYNGYWNPPLSPLKS
YSIYFQALSKANGETKINCVRLATKGASTQNSNTVEPEKQVDNTVKMAGVIAGLLMFIIILLGVMLTIKR
RRNAYSYSYYLKLAKKQKETQSGAQREMGPVASADKPTTKLSASRNDEGFSSSSQDVNGFTDGSRGELSQ
PTLTIQTHPYRTCDPVEMSYPRDQFQPAIRVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKED
ENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENS
ASIVMVTNLVEVGRVKCVRYWPDDTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSW
PDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVRELR
AQRVNLVQTEEQYVFVHDAILEACLCGNTAIPVCEFRSLYYNISRLDPQTNSSQIKDEFQTLNIVTPRVR
PEDCSIGLLPRNHDKNRSMDVLPLDRCLPFLISVDGESSNYINAALMDSHKQPAAFVVTQHPLPNTVADF
WRLVFDYNCSSVVMLNEMDTAQFCMQYWPEKTSGCYGPIQVEFVSADIDEDIIHRIFRICNMARPQDGYR
IVQHLQYIGWPAYRDTPPSKRSLLKVVRRLEKWQEQYDGREGRTVVHCLNGGGRSGTFCAICSVCEMIQQ
QNIIDVFHIVKTLRNNKSNMVETLEQYKFVYEVALEYLSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH