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Report for CCDS4807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4807.1 Public Homo sapiens 6 TULP1 24 110 108 CCDS HistoryNCBI Gene:7287Re-query CCDS DB by CCDS ID:4807.1Re-query CCDS DB by GeneID:7287See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4807.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229771.11 ENSP00000229771.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229771.11Link to Ensembl Protein Viewer:ENSP00000229771.6Re-query CCDS DB by Nucleotide ID:ENST00000229771Re-query CCDS DB by Protein ID:ENSP00000229771
Original member Current member NCBI NM_003322.6 NP_003313.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003322.6Link to Protein Sequence:NP_003313.3Re-query CCDS DB by Nucleotide ID:NM_003322Re-query CCDS DB by Protein ID:NP_003313Link to BLAST:NP_003313.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003313.3 542 O00294-1 542 100% 0 0

Chromosomal Locations for CCDS 4807.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35498327 35498460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35499981 35500152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35503559 35503657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35503737 35503848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35505741 35505853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35506003 35506173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35506274 35506279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35509209 35509312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35509634 35509750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35509827 35509928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35510861 35511010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35511648 35511806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35512180 35512270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35512639 35512690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35512812 35512858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGCCTCTGCGGGATGAAACCCTCCGAGAGGTGTGGGCCTCTGACAGTGGGCATGAAGAAGAAAGCCTGA
GCCCGGAGGCCCCGCGGCGCCCCAAACAGCGACCCGCCCCGGCACAGAGGCTAAGGAAGAAGAGGACGGA
GGCCCCCGAATCCCCCTGCCCCACGGGATCCAAGCCCCGGAAGCCCGGAGCTGGGCGGACGGGGAGGCCG
CGGGAGGAGCCTTCCCCAGACCCAGCCCAGGCCCGGGCGCCGCAGACGGTCTACGCCAGGTTCCTCAGGG
ACCCCGAGGCCAAGAAGCGCGACCCCCGGGAAACCTTTCTGGTAGCCCGTGCCCCAGACGCGGAGGACGA
GGAGGAGGAGGAAGAGGAGGACGAGGAGGACGAGGAAGAGGAGGCAGAGGAAAAGAAAGAGAAAATCCTT
CTGCCTCCCAAGAAGCCCCTGAGAGAGAAGAGCTCCGCAGACCTGAAGGAGAGGAGGGCCAAGGCCCAGG
GCCCAAGGGGAGACCTGGGAAGCCCTGACCCCCCACCGAAACCTCTGCGTGTTAGGAATAAGGAAGCTCC
AGCAGGGGAGGGGACCAAGATGAGAAAGACCAAGAAGAAAGGGTCTGGGGAGGCCGACAAGGACCCCTCA
GGGAGCCCAGCCAGTGCGAGGAAGAGCCCAGCAGCCATGTTTCTGGTTGGGGAAGGCAGTCCTGACAAGA
AAGCCCTGAAGAAGAAAGGCACTCCCAAAGGCGCGAGGAAGGAGGAAGAAGAGGAGGAGGAGGCAGCTAC
GGTGATAAAGAAGAGCAATCAAAAGGGCAAAGCCAAAGGAAAAGGCAAAAAGAAAGCGAAGGAGGAGAGG
GCCCCGTCTCCCCCCGTGGAGGTGGACGAACCCCGGGAGTTTGTGCTCCGGCCTGCCCCCCAGGGCCGCA
CGGTGCGCTGCCGGCTGACCCGGGACAAAAAGGGCATGGATCGAGGCATGTATCCCTCCTACTTCCTGCA
CCTGGACACGGAGAAGAAGGTGTTCCTCTTGGCTGGCAGGAAACGAAAACGGAGCAAGACAGCCAATTAC
CTCATCTCCATCGACCCTACCAATCTGTCCCGAGGAGGGGAGAATTTCATCGGGAAGCTGAGGTCCAACC
TCCTGGGGAACCGCTTCACGGTCTTTGACAACGGGCAGAACCCACAGCGTGGGTACAGCACTAATGTGGC
AAGCCTTCGGCAGGAGCTGGCAGCTGTGATCTATGAAACCAACGTGCTGGGCTTCCGTGGCCCCCGGCGC
ATGACCGTCATCATTCCTGGCATGAGTGCGGAGAACGAGAGGGTCCCCATCCGGCCCCGAAATGCTAGTG
ACGGCCTGCTGGTGCGCTGGCAGAACAAGACGCTGGAGAGCCTCATAGAACTGCACAACAAGCCACCTGT
CTGGAACGATGACAGTGGCTCCTACACCCTCAACTTCCAAGGCCGGGTCACCCAGGCCTCAGTCAAGAAC
TTCCAGATTGTCCACGCTGATGACCCCGACTATATCGTGCTGCAGTTCGGCCGCGTGGCGGAGGACGCCT
TCACCCTAGACTACCGGTACCCGCTGTGCGCCCTGCAGGCCTTCGCCATCGCCCTCTCCAGTTTCGACGG
GAAGCTGGCCTGCGAGTGA

Translation (542 aa):
MPLRDETLREVWASDSGHEEESLSPEAPRRPKQRPAPAQRLRKKRTEAPESPCPTGSKPRKPGAGRTGRP
REEPSPDPAQARAPQTVYARFLRDPEAKKRDPRETFLVARAPDAEDEEEEEEEDEEDEEEEAEEKKEKIL
LPPKKPLREKSSADLKERRAKAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGEADKDPS
GSPASARKSPAAMFLVGEGSPDKKALKKKGTPKGARKEEEEEEEAATVIKKSNQKGKAKGKGKKKAKEER
APSPPVEVDEPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANY
LISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLGFRGPRR
MTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKN
FQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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