NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87154.1 Public Homo sapiens 3 RNF13 24 110 108 CCDS HistoryNCBI Gene:11342Re-query CCDS DB by CCDS ID:87154.1Re-query CCDS DB by GeneID:11342See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361785.10 ENSP00000355268.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361785.10Link to Ensembl Protein Viewer:ENSP00000355268.6Re-query CCDS DB by Nucleotide ID:ENST00000361785Re-query CCDS DB by Protein ID:ENSP00000355268
Original member Current member NCBI NM_001378287.1 NP_001365216.1 Accepted alive Link to Nucleotide Sequence:NM_001378287.1Link to Protein Sequence:NP_001365216.1Re-query CCDS DB by Nucleotide ID:NM_001378287Re-query CCDS DB by Protein ID:NP_001365216Link to BLAST:NP_001365216.1
Original member Current member NCBI NM_001378288.1 NP_001365217.1 Accepted alive Link to Nucleotide Sequence:NM_001378288.1Link to Protein Sequence:NP_001365217.1Re-query CCDS DB by Nucleotide ID:NM_001378288Re-query CCDS DB by Protein ID:NP_001365217Link to BLAST:NP_001365217.1
Original member Current member NCBI NM_001378289.1 NP_001365218.1 Accepted alive Link to Nucleotide Sequence:NM_001378289.1Link to Protein Sequence:NP_001365218.1Re-query CCDS DB by Nucleotide ID:NM_001378289Re-query CCDS DB by Protein ID:NP_001365218Link to BLAST:NP_001365218.1
Original member Current member NCBI NM_001378290.1 NP_001365219.1 Accepted alive Link to Nucleotide Sequence:NM_001378290.1Link to Protein Sequence:NP_001365219.1Re-query CCDS DB by Nucleotide ID:NM_001378290Re-query CCDS DB by Protein ID:NP_001365219Link to BLAST:NP_001365219.1
Original member NCBI NM_183383.2 NP_899239.2 Accepted not alive Link to Nucleotide Sequence:NM_183383.2Link to Protein Sequence:NP_899239.2Re-query CCDS DB by Nucleotide ID:NM_183383Re-query CCDS DB by Protein ID:NP_899239Link to BLAST:NP_899239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365216.1 262 O43567-2 262 100% 0 0
NP_001365217.1 262 O43567-2 262 100% 0 0
NP_001365218.1 262 O43567-2 262 100% 0 0
NP_001365219.1 262 O43567-2 262 100% 0 0
NP_899239.2 262 O43567-2 262 100% 0 0

Chromosomal Locations for CCDS 87154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149895519 149895570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149902072 149902162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149911978 149912083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149921134 149921227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149960056 149960136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149960740 149961104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGTTGATTCTGATGACCTCATTAGCATGGGATCCAACGACAGTAAGTACAGTTGAGGTACTAAAGAAAA
TTGACATTCCATCTGTCTTTATTGGTGAATCATCAGCTAATTCTCTGAAAGATGAATTCACATATGAAAA
AGGGGGCCACCTTATCTTAGTTCCAGAATTTAGTCTTCCTTTGGAATACTACCTAATTCCCTTCCTTATC
ATAGTGGGCATCTGTCTCATCTTGATAGTCATTTTCATGATCACAAAATTTGTCCAGGATAGACATAGAG
CTAGAAGAAACAGACTTCGTAAAGATCAACTTAAGAAACTTCCTGTACATAAATTCAAGAAAGGAGATGA
GTATGATGTATGTGCCATTTGTTTGGATGAGTATGAAGATGGAGACAAACTCAGAATCCTTCCCTGTTCC
CATGCTTATCACTGCAAGTGTGTAGACCCTTGGCTAACTAAAACCAAAAAAACCTGTCCAGTGTGCAAGC
AAAAAGTTGTTCCTTCTCAAGGCGATTCAGACTCTGACACAGACAGTAGTCAAGAAGAAAATGAAGTGAC
AGAACATACCCCTTTACTGAGACCTTTAGCTTCTGTCAGTGCCCAGTCATTTGGGGCTTTATCGGAATCC
CGCTCACATCAGAACATGACAGAATCTTCAGACTATGAGGAAGACGACAATGAAGATACTGACAGTAGTG
ATGCAGAAAATGAAATTAATGAACATGATGTCGTGGTCCAGTTGCAGCCTAATGGTGAACGGGATTACAA
CATAGCAAATACTGTTTGA

Translation (262 aa):
MLILMTSLAWDPTTVSTVEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLI
IVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCS
HAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSES
RSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH