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Report for CCDS1616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1616.1 Public Homo sapiens 1 CHRM3 24 110 108 CCDS HistoryNCBI Gene:1131Re-query CCDS DB by CCDS ID:1616.1Re-query CCDS DB by GeneID:1131See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255380.8 ENSP00000255380.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000255380.8Link to Ensembl Protein Viewer:ENSP00000255380.4Re-query CCDS DB by Nucleotide ID:ENST00000255380Re-query CCDS DB by Protein ID:ENSP00000255380
Original member Current member EBI ENST00000615928.5 ENSP00000482377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615928.5Link to Ensembl Protein Viewer:ENSP00000482377.1Re-query CCDS DB by Nucleotide ID:ENST00000615928Re-query CCDS DB by Protein ID:ENSP00000482377
Original member Current member EBI ENST00000676433.1 ENSP00000502013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676433.1Link to Ensembl Protein Viewer:ENSP00000502013.1Re-query CCDS DB by Nucleotide ID:ENST00000676433Re-query CCDS DB by Protein ID:ENSP00000502013
Original member Current member EBI ENST00000675184.1 ENSP00000502349.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675184.1Link to Ensembl Protein Viewer:ENSP00000502349.1Re-query CCDS DB by Nucleotide ID:ENST00000675184Re-query CCDS DB by Protein ID:ENSP00000502349
Original member Current member EBI ENST00000676153.1 ENSP00000502667.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000676153.1Link to Ensembl Protein Viewer:ENSP00000502667.1Re-query CCDS DB by Nucleotide ID:ENST00000676153Re-query CCDS DB by Protein ID:ENSP00000502667
Original member Current member NCBI NM_000740.4 NP_000731.1 Accepted alive Link to Nucleotide Sequence:NM_000740.4Link to Protein Sequence:NP_000731.1Re-query CCDS DB by Nucleotide ID:NM_000740Re-query CCDS DB by Protein ID:NP_000731Link to BLAST:NP_000731.1
Original member Current member NCBI NM_001347716.2 NP_001334645.1 Accepted alive Link to Nucleotide Sequence:NM_001347716.2Link to Protein Sequence:NP_001334645.1Re-query CCDS DB by Nucleotide ID:NM_001347716Re-query CCDS DB by Protein ID:NP_001334645Link to BLAST:NP_001334645.1
Original member Current member NCBI NM_001375978.1 NP_001362907.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375978.1Link to Protein Sequence:NP_001362907.1Re-query CCDS DB by Nucleotide ID:NM_001375978Re-query CCDS DB by Protein ID:NP_001362907Link to BLAST:NP_001362907.1
Original member Current member NCBI NM_001375979.1 NP_001362908.1 Accepted alive Link to Nucleotide Sequence:NM_001375979.1Link to Protein Sequence:NP_001362908.1Re-query CCDS DB by Nucleotide ID:NM_001375979Re-query CCDS DB by Protein ID:NP_001362908Link to BLAST:NP_001362908.1
Original member Current member NCBI NM_001375980.1 NP_001362909.1 Accepted alive Link to Nucleotide Sequence:NM_001375980.1Link to Protein Sequence:NP_001362909.1Re-query CCDS DB by Nucleotide ID:NM_001375980Re-query CCDS DB by Protein ID:NP_001362909Link to BLAST:NP_001362909.1
Original member Current member NCBI NM_001375981.1 NP_001362910.1 Accepted alive Link to Nucleotide Sequence:NM_001375981.1Link to Protein Sequence:NP_001362910.1Re-query CCDS DB by Nucleotide ID:NM_001375981Re-query CCDS DB by Protein ID:NP_001362910Link to BLAST:NP_001362910.1
Original member Current member NCBI NM_001375982.1 NP_001362911.1 Accepted alive Link to Nucleotide Sequence:NM_001375982.1Link to Protein Sequence:NP_001362911.1Re-query CCDS DB by Nucleotide ID:NM_001375982Re-query CCDS DB by Protein ID:NP_001362911Link to BLAST:NP_001362911.1
Original member Current member NCBI NM_001375983.1 NP_001362912.1 Accepted alive Link to Nucleotide Sequence:NM_001375983.1Link to Protein Sequence:NP_001362912.1Re-query CCDS DB by Nucleotide ID:NM_001375983Re-query CCDS DB by Protein ID:NP_001362912Link to BLAST:NP_001362912.1
Original member Current member NCBI NM_001375984.1 NP_001362913.1 Accepted alive Link to Nucleotide Sequence:NM_001375984.1Link to Protein Sequence:NP_001362913.1Re-query CCDS DB by Nucleotide ID:NM_001375984Re-query CCDS DB by Protein ID:NP_001362913Link to BLAST:NP_001362913.1
Original member Current member NCBI NM_001375985.1 NP_001362914.1 Accepted alive Link to Nucleotide Sequence:NM_001375985.1Link to Protein Sequence:NP_001362914.1Re-query CCDS DB by Nucleotide ID:NM_001375985Re-query CCDS DB by Protein ID:NP_001362914Link to BLAST:NP_001362914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000731.1 590 P20309 590 100% 0 0
NP_001334645.1 590 P20309 590 100% 0 0
NP_001362907.1 590 P20309 590 100% 0 0
NP_001362908.1 590 P20309 590 100% 0 0
NP_001362909.1 590 P20309 590 100% 0 0
NP_001362910.1 590 P20309 590 100% 0 0
NP_001362911.1 590 P20309 590 100% 0 0
NP_001362912.1 590 P20309 590 100% 0 0
NP_001362913.1 590 P20309 590 100% 0 0
NP_001362914.1 590 P20309 590 100% 0 0

Chromosomal Locations for CCDS 1616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 239907452 239909224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGACCTTGCACAATAACAGTACAACCTCGCCTTTGTTTCCAAACATCAGCTCCTCCTGGATACACAGCC
CCTCCGATGCAGGGCTGCCCCCGGGAACCGTCACTCATTTCGGCAGCTACAATGTTTCTCGAGCAGCTGG
CAATTTCTCCTCTCCAGACGGTACCACCGATGACCCTCTGGGAGGTCATACCGTCTGGCAAGTGGTCTTC
ATCGCTTTCTTAACGGGCATCCTGGCCTTGGTGACCATCATCGGCAACATCCTGGTAATTGTGTCATTTA
AGGTCAACAAGCAGCTGAAGACGGTCAACAACTACTTCCTCTTAAGCCTGGCCTGTGCCGATCTGATTAT
CGGGGTCATTTCAATGAATCTGTTTACGACCTACATCATCATGAATCGATGGGCCTTAGGGAACTTGGCC
TGTGACCTCTGGCTTGCCATTGACTACGTAGCCAGCAATGCCTCTGTTATGAATCTTCTGGTCATCAGCT
TTGACAGATACTTTTCCATCACGAGGCCGCTCACGTACCGAGCCAAACGAACAACAAAGAGAGCCGGTGT
GATGATCGGTCTGGCTTGGGTCATCTCCTTTGTCCTTTGGGCTCCTGCCATCTTGTTCTGGCAATACTTT
GTTGGAAAGAGAACTGTGCCTCCGGGAGAGTGCTTCATTCAGTTCCTCAGTGAGCCCACCATTACTTTTG
GCACAGCCATCGCTGCTTTTTATATGCCTGTCACCATTATGACTATTTTATACTGGAGGATCTATAAGGA
AACTGAAAAGCGTACCAAAGAGCTTGCTGGCCTGCAAGCCTCTGGGACAGAGGCAGAGACAGAAAACTTT
GTCCACCCCACGGGCAGTTCTCGAAGCTGCAGCAGTTACGAACTTCAACAGCAAAGCATGAAACGCTCCA
ACAGGAGGAAGTATGGCCGCTGCCACTTCTGGTTCACAACCAAGAGCTGGAAACCCAGCTCCGAGCAGAT
GGACCAAGACCACAGCAGCAGTGACAGTTGGAACAACAATGATGCTGCTGCCTCCCTGGAGAACTCCGCC
TCCTCCGACGAGGAGGACATTGGCTCCGAGACGAGAGCCATCTACTCCATCGTGCTCAAGCTTCCGGGTC
ACAGCACCATCCTCAACTCCACCAAGTTACCCTCATCGGACAACCTGCAGGTGCCTGAGGAGGAGCTGGG
GATGGTGGACTTGGAGAGGAAAGCCGACAAGCTGCAGGCCCAGAAGAGCGTGGACGATGGAGGCAGTTTT
CCAAAAAGCTTCTCCAAGCTTCCCATCCAGCTAGAGTCAGCCGTGGACACAGCTAAGACTTCTGACGTCA
ACTCCTCAGTGGGTAAGAGCACGGCCACTCTACCTCTGTCCTTCAAGGAAGCCACTCTGGCCAAGAGGTT
TGCTCTGAAGACCAGAAGTCAGATCACTAAGCGGAAAAGGATGTCCCTGGTCAAGGAGAAGAAAGCGGCC
CAGACCCTCAGTGCGATCTTGCTTGCCTTCATCATCACTTGGACCCCATACAACATCATGGTTCTGGTGA
ACACCTTTTGTGACAGCTGCATACCCAAAACCTTTTGGAATCTGGGCTACTGGCTGTGCTACATCAACAG
CACCGTGAACCCCGTGTGCTATGCTCTGTGCAACAAAACATTCAGAACCACTTTCAAGATGCTGCTGCTG
TGCCAGTGTGACAAAAAAAAGAGGCGCAAGCAGCAGTACCAGCAGAGACAGTCGGTCATTTTTCACAAGC
GCGCACCCGAGCAGGCCTTGTAG

Translation (590 aa):
MTLHNNSTTSPLFPNISSSWIHSPSDAGLPPGTVTHFGSYNVSRAAGNFSSPDGTTDDPLGGHTVWQVVF
IAFLTGILALVTIIGNILVIVSFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLA
CDLWLAIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYF
VGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKRTKELAGLQASGTEAETENF
VHPTGSSRSCSSYELQQQSMKRSNRRKYGRCHFWFTTKSWKPSSEQMDQDHSSSDSWNNNDAAASLENSA
SSDEEDIGSETRAIYSIVLKLPGHSTILNSTKLPSSDNLQVPEEELGMVDLERKADKLQAQKSVDDGGSF
PKSFSKLPIQLESAVDTAKTSDVNSSVGKSTATLPLSFKEATLAKRFALKTRSQITKRKRMSLVKEKKAA
QTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTFWNLGYWLCYINSTVNPVCYALCNKTFRTTFKMLLL
CQCDKKKRRKQQYQQRQSVIFHKRAPEQAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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