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Report for CCDS92885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92885.1 Public Homo sapiens 2 SLC38A11 24 110 108 CCDS HistoryNCBI Gene:151258Re-query CCDS DB by CCDS ID:92885.1Re-query CCDS DB by GeneID:151258See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92885.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000685975.1 ENSP00000508649.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685975.1Link to Ensembl Protein Viewer:ENSP00000508649.1Re-query CCDS DB by Nucleotide ID:ENST00000685975Re-query CCDS DB by Protein ID:ENSP00000508649
Original member Current member NCBI NM_001351537.2 NP_001338466.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351537.2Link to Protein Sequence:NP_001338466.1Re-query CCDS DB by Nucleotide ID:NM_001351537Re-query CCDS DB by Protein ID:NP_001338466Link to BLAST:NP_001338466.1

Chromosomal Locations for CCDS 92885.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164898437 164898730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164908640 164908771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164911636 164911748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164915112 164915273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164915903 164915973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164937350 164937429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164939450 164939556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164944569 164944634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164945593 164945727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164952707 164952781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164954631 164954745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164955209 164955247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGGCTACCAGAGGCAGGAGCCTGTCATCCCGCCGCAGAGAGATTTAGATGACAGAGAAACCCTTGTTT
CTGAACATGAGTATAAAGAGAAAACCTGTCAGTCTGCTGCTCTTTTTAATGTTGTCAACTCGATTATAGG
ATCTGGTATAATAGGATTGCCTTATTCAATGAAGCAAGCTGGGTTTCCTTTGGGAATATTGCTTTTATTC
TGGGTTTCATATGTTACAGACTTTTCCCTTGTTTTATTGATAAAAGGAGGGGCCCTCTCTGGAACAGATA
CCTACCAGTCTTTGGTCAATAAAACTTTCGGCTTTCCAGGGTATCTGCTCCTCTCTGTTCTTCAGTTTTT
GTATCCTTTTATAGCAATGATAAGTTACAATATAATAGCTGGAGATACTTTGAGCAAAGTTTTTCAAAGA
ATCCCAGGAGTTGATCCTGAAAACGTGTTTATTGGTCGCCACTTCATTATTGGACTTTCCACAGTTACCT
TTACTCTGCCTTTATCCTTGTACCGAAATATAGCAAAGCTTGGAAAGGTCTCCCTCATCTCTACAGGTTT
AACAACTCTGATTCTTGGAATTGTAATGGCAAGGGCAATTTCACTGGGTCCACACATACCAAAAACAGAA
GACGCTTGGGTATTTGCAAAGCCCAATGCCATTCAAGCGGTCGGGGTTATGTCTTTTGCATTTATTTGCC
ACCATAACTCCTTCTTAGTTTACAGTTCTCTAGAAGAACCCACAGTAGCTAAGTGGTCCCGCCTTATCCA
TATGTCCATCGTGATTTCTGTATTTATCTGTATATTCTTTGCTACATGTGGATACTTGACATTTACTGGC
TTCACCCAAGGGGACTTATTTGAAAATTACTGCAGAAATGATGACCTGGTAACATTTGGAAGATTTTGTT
ATGGTGTCACTGTCATTTTGACATACCCTATGGAATGCTTTGTGACAAGAGAGGTAATTGCCAATGTGTT
TTTTGGTGGGAATCTTTCATCGGTTTTCCACATTGTTGTAACAGTGATGGTCATCACTGTAGCCACGCTT
GTGTCATTGCTGATTGATTGCCTCGGGATAGTTCTAGAACTCAATGGTGTGCTCTGTGCAACTCCCCTCA
TTTTTATCATTCCATCAGCCTGTTATCTGAAACTGTCTGAAGAACCAAGGACACACTCCGATAAGATTAT
GTCTTGTGTCATGCTTCCCATTGGTGCTGTGGTGATGGTTTTTGGATTCGTCATGGCTATTACAAATACT
CAAGACTGCACCCATGGGCAGGAAATGTTCTACTGCTTTCCTGACAATTTCTCTCTCACAAATACCTCAG
AGTCTCATGTTCAGCAGACAACACAACTTTCTACTTTAAATATTAGTATCTTTCAATGA

Translation (462 aa):
MGYQRQEPVIPPQRDLDDRETLVSEHEYKEKTCQSAALFNVVNSIIGSGIIGLPYSMKQAGFPLGILLLF
WVSYVTDFSLVLLIKGGALSGTDTYQSLVNKTFGFPGYLLLSVLQFLYPFIAMISYNIIAGDTLSKVFQR
IPGVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTE
DAWVFAKPNAIQAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTG
FTQGDLFENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATL
VSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGAVVMVFGFVMAITNT
QDCTHGQEMFYCFPDNFSLTNTSESHVQQTTQLSTLNISIFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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