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Report for CCDS3423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3423.1 Public Homo sapiens 4 DCAF16 24 110 108 CCDS HistoryNCBI Gene:54876Re-query CCDS DB by CCDS ID:3423.1Re-query CCDS DB by GeneID:54876See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3423.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382247.6 ENSP00000371682.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382247.6Link to Ensembl Protein Viewer:ENSP00000371682.1Re-query CCDS DB by Nucleotide ID:ENST00000382247Re-query CCDS DB by Protein ID:ENSP00000371682
Original member Current member NCBI NM_001345880.2 NP_001332809.1 Accepted alive Link to Nucleotide Sequence:NM_001345880.2Link to Protein Sequence:NP_001332809.1Re-query CCDS DB by Nucleotide ID:NM_001345880Re-query CCDS DB by Protein ID:NP_001332809Link to BLAST:NP_001332809.1
Original member Current member NCBI NM_001345881.2 NP_001332810.1 Accepted alive Link to Nucleotide Sequence:NM_001345881.2Link to Protein Sequence:NP_001332810.1Re-query CCDS DB by Nucleotide ID:NM_001345881Re-query CCDS DB by Protein ID:NP_001332810Link to BLAST:NP_001332810.1
Original member Current member NCBI NM_001345882.2 NP_001332811.1 Accepted alive Link to Nucleotide Sequence:NM_001345882.2Link to Protein Sequence:NP_001332811.1Re-query CCDS DB by Nucleotide ID:NM_001345882Re-query CCDS DB by Protein ID:NP_001332811Link to BLAST:NP_001332811.1
Original member Current member NCBI NM_001345884.2 NP_001332813.1 Accepted alive Link to Nucleotide Sequence:NM_001345884.2Link to Protein Sequence:NP_001332813.1Re-query CCDS DB by Nucleotide ID:NM_001345884Re-query CCDS DB by Protein ID:NP_001332813Link to BLAST:NP_001332813.1
Original member Current member NCBI NM_001345885.2 NP_001332814.1 Accepted alive Link to Nucleotide Sequence:NM_001345885.2Link to Protein Sequence:NP_001332814.1Re-query CCDS DB by Nucleotide ID:NM_001345885Re-query CCDS DB by Protein ID:NP_001332814Link to BLAST:NP_001332814.1
Original member Current member NCBI NM_017741.4 NP_060211.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017741.4Link to Protein Sequence:NP_060211.3Re-query CCDS DB by Nucleotide ID:NM_017741Re-query CCDS DB by Protein ID:NP_060211Link to BLAST:NP_060211.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001332809.1 216 Q9NXF7 216 100% 0 0
NP_001332810.1 216 Q9NXF7 216 100% 0 0
NP_001332811.1 216 Q9NXF7 216 100% 0 0
NP_001332813.1 216 Q9NXF7 216 100% 0 0
NP_001332814.1 216 Q9NXF7 216 100% 0 0
NP_060211.3 216 Q9NXF7 216 100% 0 0

Chromosomal Locations for CCDS 3423.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17803491 17804141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGGTCCTAGAAATCCCTCTCCTGACCACTTGTCAGAATCAGAAAGTGAGGAAGAAGAAAATATTAGTT
ACCTAAATGAGAGTTCTGGGGAAGAGTGGGATTCCTCTGAAGAAGAGGACTCTATGGTGCCCAACTTATC
GCCTCTTGAGAGTCTTGCCTGGCAGGTTAAGTGCCTTTTAAAATATTCCACAACTTGGAAACCTTTAAAT
CCTAATTCCTGGTTGTATCATGCTAAACTGTTGGATCCAAGCACACCAGTCCATATACTTCGAGAGATAG
GTCTAAGACTCTCCCATTGTTCCCATTGTGTCCCCAAACTGGAACCAATTCCTGAATGGCCCCCTCTGGC
CTCTTGTGGAGTCCCACCTTTTCAAAAGCCTCTTACAAGTCCCAGCCGGCTCTCTAGAGATCATGCCACT
CTAAATGGAGCACTGCAATTTGCCACCAAACAGCTAAGCCGAACATTGAGTAGAGCCACTCCCATACCTG
AATACCTAAAACAGATCCCTAATTCATGTGTTTCTGGGTGTTGCTGTGGCTGGCTGACTAAAACAGTTAA
GGAAACAACTCGTACTGAACCCATCAACACTACTTATTCTTACACTGACTTCCAAAAGGCAGTTAACAAA
CTCCTAACTGCATCACTGTAA

Translation (216 aa):
MGPRNPSPDHLSESESEEEENISYLNESSGEEWDSSEEEDSMVPNLSPLESLAWQVKCLLKYSTTWKPLN
PNSWLYHAKLLDPSTPVHILREIGLRLSHCSHCVPKLEPIPEWPPLASCGVPPFQKPLTSPSRLSRDHAT
LNGALQFATKQLSRTLSRATPIPEYLKQIPNSCVSGCCCGWLTKTVKETTRTEPINTTYSYTDFQKAVNK
LLTASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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