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Report for CCDS28000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28000.1 Public Mus musculus 16 Serpind1 23 108 98 CCDS HistoryNCBI Gene:15160Re-query CCDS DB by CCDS ID:28000.1Re-query CCDS DB by GeneID:15160See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023450.14 ENSMUSP00000023450.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023450.14Link to Ensembl Protein Viewer:ENSMUSP00000023450.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023450Re-query CCDS DB by Protein ID:ENSMUSP00000023450
Original member Current member EBI ENSMUST00000231884.1 ENSMUSP00000156303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231884.1Link to Ensembl Protein Viewer:ENSMUSP00000156303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231884Re-query CCDS DB by Protein ID:ENSMUSP00000156303
Original member Current member NCBI NM_001331047.1 NP_001317976.1 Accepted alive Link to Nucleotide Sequence:NM_001331047.1Link to Protein Sequence:NP_001317976.1Re-query CCDS DB by Nucleotide ID:NM_001331047Re-query CCDS DB by Protein ID:NP_001317976Link to BLAST:NP_001317976.1
Original member Current member NCBI NM_008223.4 NP_032249.3 Accepted alive Link to Nucleotide Sequence:NM_008223.4Link to Protein Sequence:NP_032249.3Re-query CCDS DB by Nucleotide ID:NM_008223Re-query CCDS DB by Protein ID:NP_032249Link to BLAST:NP_032249.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317976.1 478 P49182 478 100% 0 0
NP_032249.3 478 P49182 478 100% 0 0

Chromosomal Locations for CCDS 28000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17336311 17337136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17339768 17340041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17342341 17342485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17342853 17343044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGAAACATCCACTCTGCACTCTTCTTTCTCTCATCACATTTATGTGTATTGGGAGCAAAGGCCTTGCTG
AGCAGCTAACTAATGAAAACCTGACCACGTCCTTCCTGCCTGCTAACTTCCACAAAGAAAACACAGTCAC
CAATGACTGGATCCCAGAGGGGGAAGAGGATGAGGACTACCTGGACCTGGAGAAGCTGCTTGGTGAAGAT
GACGACTACATTTATATCATCGATGCCGTTTCCCCGACAGACTCAGAATCAAGTGCTGGCAACATCCTGC
AGCTTTTCCAAGGCAAGAGCCGGATCCAGCGTCTTAATATCCTCAATGCAAAGTTTGCCTTCAACCTTTA
CCGAGTCCTGAAGGACCAGGCTACCACATCTGATAACCTCTTCATAGCACCTGTTGGCATTTCTACTGCC
ATGGGGATGATCTCCTTAGGTCTGAGGGGAGAGACCCATGAAGAAGTACACTCAGTTCTACACTTCAGAG
ACTTTGTCAATGCTAGCAGCAAGTACGAGGTTACCACCATTCACAATCTCTTTCGAAAGCTGACCCATCG
TCTATTCAGGAGGAATTTTGGGTACACACTTCGGTCAGTTAATGGCCTTTATATTCAGAAGCAGTTTCCC
ATACGGGAGGACTTCAAAGCTGCTATGAGAGAGTTTTACTTTGCTGAGGCCCAGGAGGCTAACTTCCCAG
ATCCTGCCTTCATATCAAAGGCAAACAACCACATTCTGAAACTCACCAAGGGCCTTATAAAAGAAGCTCT
GGAGAATATAGATCCTGCTACTCAGATGCTGATTCTGAACTGCATCTACTTCAAAGGAACTTGGGTGAAT
AAATTCCCAGTAGAAATGACGCACAACCACAACTTCCGGCTGAATGAGAGAGAAGTAGTCAAAGTCTCCA
TGATGCAAACTAAAGGGAATTTCCTTGCGGCAAATGACCAGGAGCTAGACTGTGACATTCTCCAGCTGGA
GTACGTAGGGGGCATCAGCATGCTTATTGTAGTTCCACGGAAGCTATCGGGAATGAAGACTCTTGAAGCA
CAGCTTACACCCCAGGTGGTGGAGAGATGGCAAAAAAGCATGACAAACAGAACTCGAGAGGTACTTCTGC
CAAAGTTTAAGCTTGAGAAGAATTACAACCTGGTGGAGGTCCTTAAGTCCATGGGAATCACAAAGCTCTT
CAACAAGAATGGCAATATGTCAGGCATCTCAGACCAGAGGATCGCCATTGACCTGTTCAAGCACCAAAGT
ACCATCACAGTGAATGAAGAGGGTACCCAAGCTGCAGCTGTAACTACAGTGGGGTTCATGCCGCTGTCTA
CCCAAGTCCGATTCACTGTCGACCGTCCCTTCCTGTTCCTAGTGTATGAGCACCGAACCAGCTGTCTGCT
CTTCATGGGAAAAGTGACCAACCCTGCCAAGTCTTAA

Translation (478 aa):
MKHPLCTLLSLITFMCIGSKGLAEQLTNENLTTSFLPANFHKENTVTNDWIPEGEEDEDYLDLEKLLGED
DDYIYIIDAVSPTDSESSAGNILQLFQGKSRIQRLNILNAKFAFNLYRVLKDQATTSDNLFIAPVGISTA
MGMISLGLRGETHEEVHSVLHFRDFVNASSKYEVTTIHNLFRKLTHRLFRRNFGYTLRSVNGLYIQKQFP
IREDFKAAMREFYFAEAQEANFPDPAFISKANNHILKLTKGLIKEALENIDPATQMLILNCIYFKGTWVN
KFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPRKLSGMKTLEA
QLTPQVVERWQKSMTNRTREVLLPKFKLEKNYNLVEVLKSMGITKLFNKNGNMSGISDQRIAIDLFKHQS
TITVNEEGTQAAAVTTVGFMPLSTQVRFTVDRPFLFLVYEHRTSCLLFMGKVTNPAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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