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Report for CCDS19916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19916.1 Public Mus musculus 6 Gpr85 23 108 98 CCDS HistoryNCBI Gene:64450Re-query CCDS DB by CCDS ID:19916.1Re-query CCDS DB by GeneID:64450See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060442.13 ENSMUSP00000053837.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060442.13Link to Ensembl Protein Viewer:ENSMUSP00000053837.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060442Re-query CCDS DB by Protein ID:ENSMUSP00000053837
Original member Current member EBI ENSMUST00000115491.1 ENSMUSP00000111154.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115491.1Link to Ensembl Protein Viewer:ENSMUSP00000111154.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115491Re-query CCDS DB by Protein ID:ENSMUSP00000111154
Original member Current member EBI ENSMUST00000115492.1 ENSMUSP00000111155.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115492.1Link to Ensembl Protein Viewer:ENSMUSP00000111155.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115492Re-query CCDS DB by Protein ID:ENSMUSP00000111155
Original member Current member NCBI NM_001330666.1 NP_001317595.1 Accepted alive Link to Nucleotide Sequence:NM_001330666.1Link to Protein Sequence:NP_001317595.1Re-query CCDS DB by Nucleotide ID:NM_001330666Re-query CCDS DB by Protein ID:NP_001317595Link to BLAST:NP_001317595.1
Original member Current member NCBI NM_001330667.1 NP_001317596.1 Accepted alive Link to Nucleotide Sequence:NM_001330667.1Link to Protein Sequence:NP_001317596.1Re-query CCDS DB by Nucleotide ID:NM_001330667Re-query CCDS DB by Protein ID:NP_001317596Link to BLAST:NP_001317596.1
Original member Current member NCBI NM_145066.5 NP_659503.1 Accepted alive Link to Nucleotide Sequence:NM_145066.5Link to Protein Sequence:NP_659503.1Re-query CCDS DB by Nucleotide ID:NM_145066Re-query CCDS DB by Protein ID:NP_659503Link to BLAST:NP_659503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317595.1 370 P60894 370 100% 0 0
NP_001317596.1 370 P60894 370 100% 0 0
NP_659503.1 370 P60894 370 100% 0 0

Chromosomal Locations for CCDS 19916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13835791 13836903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGCGAACTATAGCCATGCAGCCGACAACATTTTGCAAAATCTCTCGCCTCTAACAGCCTTTCTGAAAC
TGACTTCCCTGGGTTTCATAATAGGAGTCAGCGTTGTGGGCAACCTTCTGATCTCCATTTTGCTAGTGAA
AGATAAGACCTTGCATAGAGCTCCTTACTACTTCCTGCTGGATCTGTGCTGCTCAGACATCCTCAGATCT
GCAATTTGTTTTCCATTTGTATTCAACTCTGTCAAAAATGGCTCCACCTGGACTTACGGGACTCTGACTT
GCAAAGTGATTGCCTTCCTGGGGGTTTTGTCCTGTTTCCACACTGCCTTCATGCTCTTCTGCATCAGCGT
CACCAGATACTTAGCCATCGCCCATCACCGCTTCTATACAAAGAGGCTGACCTTTTGGACGTGTTTGGCT
GTGATCTGCATGGTGTGGACTCTGTCCGTGGCCATGGCATTCCCCCCAGTTTTAGATGTAGGCACCTACT
CCTTCATTAGGGAGGAGGATCAATGCACCTTCCAACACCGCTCCTTCAGGGCTAACGATTCCCTAGGATT
TATGCTGCTCCTTGCTCTCATCCTCCTAGCCACACAGCTTGTCTACCTCAAGCTGATATTTTTTGTCCAC
GATCGAAGGAAAATGAAGCCAGTCCAGTTTGTAGCAGCAGTGAGTCAGAACTGGACCTTTCATGGCCCTG
GAGCTAGCGGCCAGGCAGCTGCCAATTGGCTAGCAGGATTTGGAAGGGGTCCCACACCACCCACCTTGCT
GGGCATCAGGCAAAATGCGAATACCACAGGCAGAAGGCGGCTATTGGTCTTGGATGAGTTCAAAATGGAG
AAAAGAATCAGCAGAATGTTTTATATAATGACTTTCCTCTTCCTAACCTTGTGGGGTCCCTACCTGGTGG
CCTGCTATTGGAGAGTTTTTGCACGAGGGCCTGTAGTACCAGGGGGATTTCTAACAGCCGCTGTCTGGAT
GAGTTTCGCCCAAGCAGGAATCAATCCCTTTGTCTGCATTTTCTCCAACAGGGAGCTGAGGCGCTGTTTC
AGCACAACCCTTCTTTACTGCAGAAAATCCAGGTTACCAAGGGAACCTTACTGTGTTATATGA

Translation (370 aa):
MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRS
AICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLA
VICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVH
DRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKME
KRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCF
STTLLYCRKSRLPREPYCVI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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