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Report for CCDS79533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79533.1 Public Mus musculus 17 Cd320 23 108 98 CCDS HistoryNCBI Gene:54219Re-query CCDS DB by CCDS ID:79533.1Re-query CCDS DB by GeneID:54219See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087559.7 ENSMUSP00000084839.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087559.7Link to Ensembl Protein Viewer:ENSMUSP00000084839.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000087559Re-query CCDS DB by Protein ID:ENSMUSP00000084839
Original member Current member NCBI NM_001305169.1 NP_001292098.1 Accepted alive Link to Nucleotide Sequence:NM_001305169.1Link to Protein Sequence:NP_001292098.1Re-query CCDS DB by Nucleotide ID:NM_001305169Re-query CCDS DB by Protein ID:NP_001292098Link to BLAST:NP_001292098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292098.1 246 Q9Z1P5-2 246 100% 0 0

Chromosomal Locations for CCDS 79533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33843553 33843631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33846016 33846141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33847495 33847725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33848017 33848178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33848286 33848428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGTGGGCTGGAAGGCTTTTGTTTCTGATTTTGACCTCTCACCACGCAGGGCTGGTCACCCGGTACCTTC
TTGCAGCAGGCTCTAGAGCTGACTCCTGCCCGACAGACACCTTCCAGTGTCTTACCAGTGGCTATTGTGT
GCCCCTTTCCTGGCGCTGTGATGGGGACCAGGACTGCTCTGATGGCAGTGACGAGGAAGACTGTAGGATT
GAGTCATGTGCTCAGAATGGGCAGTGCCAACCACAGTCTGCCCTTCCTTGCTCCTGTGACAACATCAGTG
GTTGCTCTGATGTCTCTGACAAGAACCTCAACTGCAGCCGCCCACCCTGTCAGGAGAGTGAGCTGCATTG
CATACTGGATGATGTCTGTATTCCACACACGTGGCGCTGTGATGGCCACCCAGACTGTCTTGACTCCAGT
GATGAGCTCAGCTGTGACACTGACACAGAAATTGATAAGATATTCCAGGAGGAGAATGCCACAACTACAA
GGATTTCTACGACCATGGAGAATGAGACCTCTTTCAGGAATGTAACATTTACCTCTGCTGGGGACTCATC
CCGAAACCCAAGTGCCTATGGGGTTATTGCAGCTGCTGGGGTGTTGAGTGCCATCCTGGTTTCGGCCACC
CTTCTCATATTGCTACGCCTCCGAGGTCAGGGTTATCTGCCCCCACCAGGGCTGTTGGTGGCTGTGAAGG
AGTCGCTGCTGCTGTCAGAAAGGAAAACCTCTCTGATCTGA

Translation (246 aa):
MWAGRLLFLILTSHHAGLVTRYLLAAGSRADSCPTDTFQCLTSGYCVPLSWRCDGDQDCSDGSDEEDCRI
ESCAQNGQCQPQSALPCSCDNISGCSDVSDKNLNCSRPPCQESELHCILDDVCIPHTWRCDGHPDCLDSS
DELSCDTDTEIDKIFQEENATTTRISTTMENETSFRNVTFTSAGDSSRNPSAYGVIAAAGVLSAILVSAT
LLILLRLRGQGYLPPPGLLVAVKESLLLSERKTSLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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