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Report for CCDS77957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77957.1 Public Homo sapiens 4 SCLT1 24 110 108 CCDS HistoryNCBI Gene:132320Re-query CCDS DB by CCDS ID:77957.1Re-query CCDS DB by GeneID:132320See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77957.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506368.5 ENSP00000424304.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506368.5Link to Ensembl Protein Viewer:ENSP00000424304.1Re-query CCDS DB by Nucleotide ID:ENST00000506368Re-query CCDS DB by Protein ID:ENSP00000424304
Original member Current member NCBI NM_001300898.2 NP_001287827.1 Accepted alive Link to Nucleotide Sequence:NM_001300898.2Link to Protein Sequence:NP_001287827.1Re-query CCDS DB by Nucleotide ID:NM_001300898Re-query CCDS DB by Protein ID:NP_001287827Link to BLAST:NP_001287827.1

Chromosomal Locations for CCDS 77957.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129038021 129038126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129039041 129039096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129043395 129043467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129043993 129044051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129082306 129082373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129093070 129093103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGCTGCAGAAATCGACTTTCTGAGAGAGCAAAATCGAAGACTAAATGAAGATTTTAGGCGGTATCAAA
TGGAAAGTTTTTCCAAATATTCATCTGTACAGAAAGCTGTCTGCCAAGGAGAAGGAGACGACACATTTGA
AAACCTAGTATTTGACCAAAGCTTTTTAGCTCCTCTTGTTACTGAGTATGATAAACACCTAGGAGAACTA
AATGGGCAGCTGAAATATTACCAGAAACAGGTGGGTGAGATGAAATTACAACTTGAAAATGTCATCAAGG
AAAATGAAAGAGTCTTGCTCTGTCTCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTC
CGCCTCCCGGATTCGTGCCATTCTCCTGCCTCAGCCTCCCCAGTAG

Translation (131 aa):
MAAEIDFLREQNRRLNEDFRRYQMESFSKYSSVQKAVCQGEGDDTFENLVFDQSFLAPLVTEYDKHLGEL
NGQLKYYQKQVGEMKLQLENVIKENERVLLCLPGWSAVVRSRLTASSASRIRAILLPQPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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