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Report for CCDS71236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71236.1 Public Mus musculus 3 Il21 23 108 98 CCDS HistoryNCBI Gene:60505Re-query CCDS DB by CCDS ID:71236.1Re-query CCDS DB by GeneID:60505See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161015.1 ENSMUSP00000124668.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161015.1Link to Ensembl Protein Viewer:ENSMUSP00000124668.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161015Re-query CCDS DB by Protein ID:ENSMUSP00000124668
Original member Current member NCBI NM_001291041.1 NP_001277970.1 Accepted alive Link to Nucleotide Sequence:NM_001291041.1Link to Protein Sequence:NP_001277970.1Re-query CCDS DB by Nucleotide ID:NM_001291041Re-query CCDS DB by Protein ID:NP_001277970Link to BLAST:NP_001277970.1

Chromosomal Locations for CCDS 71236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37225377 37225526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37227655 37227810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37232267 37232302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37232419 37232565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGGAGAGGACCCTTGTCTGTCTGGTAGTCATCTTCTTGGGGACAGTGGCCCATAAATCAAGCCCCCAAG
GGCCAGATCGCCTCCTGATTAGACTTCGTCACCTTATTGACATTGTTGAACAGCTGAAAATCTATGAAAA
TGACTTGGATCCTGAACTTCTATCAGCTCCACAAGATGTAAAGGGGCACTGTGAGCATGCAGCTTTTGCC
TGTTTTCAGAAGGCCAAACTCAAGCCATCAAACCCTGGAAACAATAAGACATTCATCATTGACCTCGTGG
CCCAGCTCAGGAGGAGGCTGCCTGCCAGGAGGGGAGGAAAGAAACAGAAGCACATAGCTAAATGCCCTTC
CTGTGATTCGTATGAGAAAAGGACACCCAAAGAATTCCTAGAAAGACTAAAATGGCTCCTTCAAAAGGTA
TGCACCTTAAATGCATTTCTTTCACTTCCATGTTGTGTCCGGGTACCTCCTGTGCCCAGTGACTCATAG

Translation (162 aa):
MERTLVCLVVIFLGTVAHKSSPQGPDRLLIRLRHLIDIVEQLKIYENDLDPELLSAPQDVKGHCEHAAFA
CFQKAKLKPSNPGNNKTFIIDLVAQLRRRLPARRGGKKQKHIAKCPSCDSYEKRTPKEFLERLKWLLQKV
CTLNAFLSLPCCVRVPPVPSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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