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Report for CCDS23418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23418.1 Public Mus musculus 9 Pxylp1 23 108 98 CCDS HistoryNCBI Gene:235534Re-query CCDS DB by CCDS ID:23418.1Re-query CCDS DB by GeneID:235534See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078478.7 ENSMUSP00000077571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078478.7Link to Ensembl Protein Viewer:ENSMUSP00000077571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000078478Re-query CCDS DB by Protein ID:ENSMUSP00000077571
Original member Current member EBI ENSMUST00000112951.8 ENSMUSP00000108574.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112951.8Link to Ensembl Protein Viewer:ENSMUSP00000108574.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112951Re-query CCDS DB by Protein ID:ENSMUSP00000108574
Original member Current member EBI ENSMUST00000120101.7 ENSMUSP00000113210.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120101.7Link to Ensembl Protein Viewer:ENSMUSP00000113210.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120101Re-query CCDS DB by Protein ID:ENSMUSP00000113210
Original member Current member EBI ENSMUST00000119141.7 ENSMUSP00000113489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119141.7Link to Ensembl Protein Viewer:ENSMUSP00000113489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119141Re-query CCDS DB by Protein ID:ENSMUSP00000113489
Original member Current member NCBI NM_001289645.1 NP_001276574.1 Accepted alive Link to Nucleotide Sequence:NM_001289645.1Link to Protein Sequence:NP_001276574.1Re-query CCDS DB by Nucleotide ID:NM_001289645Re-query CCDS DB by Protein ID:NP_001276574Link to BLAST:NP_001276574.1
Original member Current member NCBI NM_001289646.1 NP_001276575.1 Accepted alive Link to Nucleotide Sequence:NM_001289646.1Link to Protein Sequence:NP_001276575.1Re-query CCDS DB by Nucleotide ID:NM_001289646Re-query CCDS DB by Protein ID:NP_001276575Link to BLAST:NP_001276575.1
Original member Current member NCBI NM_001289647.1 NP_001276576.1 Accepted alive Link to Nucleotide Sequence:NM_001289647.1Link to Protein Sequence:NP_001276576.1Re-query CCDS DB by Nucleotide ID:NM_001289647Re-query CCDS DB by Protein ID:NP_001276576Link to BLAST:NP_001276576.1
Original member Current member NCBI NM_153420.3 NP_700469.1 Accepted alive Link to Nucleotide Sequence:NM_153420.3Link to Protein Sequence:NP_700469.1Re-query CCDS DB by Nucleotide ID:NM_153420Re-query CCDS DB by Protein ID:NP_700469Link to BLAST:NP_700469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276574.1 480 Q8BHA9 480 100% 0 0
NP_001276575.1 480 Q8BHA9 480 100% 0 0
NP_001276576.1 480 Q8BHA9 480 100% 0 0
NP_700469.1 480 Q8BHA9 480 100% 0 0

Chromosomal Locations for CCDS 23418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96824685 96825622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96828930 96829069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96839086 96839212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96839959 96840117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96856368 96856446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGCTTCACCGTAATCGCTTCTTGGTGCTGCTGGCCCTGGCTGGGCTCTTGGCTTTCCTGAGCCTCAGCC
TGCAGTTCTTCCACTTGATCCCAGTGTCTGCCACAAAGAATGGAGGAAGCAGCAAGAGTCGAAAGAGGAT
CATGCCTGACCCAGTGACAGAGCCTCCCACCGTAGACCCGGTTTATGAAGCTCTTCTGTACTGCAACATT
CCAAGCGTAGCGGAGCACAGCATGGAAGGTCATGCCCCGCATCATTATAAGCTGGTCTCCGTTCATGTGT
TCATTCGCCATGGGGACAGGTACCCACTGTATGCCATTCCCAAAACAAAGCGGCCAGAAATCGACTGCAC
TCTAGTGGCTAGCAGGAAGCCGTATCACCCTAAACTAGAAGCTTTCATTAGTCACATGTTGAAAGGATCC
GGAGCCTCTTTTGAAAGCCCCTTAAATTCCCTGCCTCTCTATCCTAACCATCCTCTGTGTGAGACGGGAG
AGCTCACGCAGACAGGAGTCGTGCAGCATCTGCTGAATGGCCAGCTGCTGAGGGACATCTATCTGAGGAA
ACACAAACTTCTGCCCAACAACTGGTCCTCAGACCAGCTTTACCTGGAGAGCACGGGGAAGAGCCGCACC
CTGCAGAGCGGGCTAGCCCTGCTCTACGGCTTCCTCCCAGAGTTTGACTGGAAGAAGGTTTATTTCAAGC
ACCAGCCAAGTGCCCTGTTCTGCTCTGGAAGCTGCTACTGCCCGCTGAGAAACCAGTATCTGGAGAAGGA
ACAGCGACGCCAGTACCTGCTACGTTTGAAGAACAGCGACCTAGAGAGGACCTACGGGGAGATGGCCAAG
ATTGTGGACATCCCCACGAAGCAGCTCCGCGCGGCCAACCCCATCGATTCCATGCTCTGCCACTTCTGCC
ACAATGTCAGCTTCCCCTGCAGCAGAAGCGGCTGCCTTGGCATGGAGCACTTCAAGGTGATCAAGACGCA
CCAGATAGAGGATGAGAGGGAGCGCCACGAGAAGCTCCTGTACTTTGGGTACTCCCTCCTCGGGGCCCAC
CCCATCCTAAATCAGACGGTCAACCGGATGCAGCGCGCTGCCTCGGGCTGGAGGGATGAGCTGTTCACCC
TCTACTCTGCTCATGACGTCACCCTGTCACCCATCCTCAGTGCCTTGGGTCTTTTGGAAGCCAGGTTCCC
GAGGTTTGCCGCCAGGCTGGTTTTTGAGCTCTGGCAAGACCGTCAAAAGCCCAGTGAACATTCGGTCCGA
ATTCTTTATAACGGGGCTGATGTTACCTTCCACACCTCCTTCTGCCATGACTTCCACAAGCGCTCTCCCA
AGCCTATGTGTCCTCTTGAGAACTTGGTCCGCTTTGTCAAACGGGATATGTTTGTGGCCCTGGATGGCAG
TAGTACTAACTATTACGATGCCTGTCATGGGGAAGGGGCCTAA

Translation (480 aa):
MLHRNRFLVLLALAGLLAFLSLSLQFFHLIPVSATKNGGSSKSRKRIMPDPVTEPPTVDPVYEALLYCNI
PSVAEHSMEGHAPHHYKLVSVHVFIRHGDRYPLYAIPKTKRPEIDCTLVASRKPYHPKLEAFISHMLKGS
GASFESPLNSLPLYPNHPLCETGELTQTGVVQHLLNGQLLRDIYLRKHKLLPNNWSSDQLYLESTGKSRT
LQSGLALLYGFLPEFDWKKVYFKHQPSALFCSGSCYCPLRNQYLEKEQRRQYLLRLKNSDLERTYGEMAK
IVDIPTKQLRAANPIDSMLCHFCHNVSFPCSRSGCLGMEHFKVIKTHQIEDERERHEKLLYFGYSLLGAH
PILNQTVNRMQRAASGWRDELFTLYSAHDVTLSPILSALGLLEARFPRFAARLVFELWQDRQKPSEHSVR
ILYNGADVTFHTSFCHDFHKRSPKPMCPLENLVRFVKRDMFVALDGSSTNYYDACHGEGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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