NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59023.1 Public Homo sapiens 6 RCAN2 24 110 108 CCDS HistoryNCBI Gene:10231Re-query CCDS DB by CCDS ID:59023.1Re-query CCDS DB by GeneID:10231See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306764.11 ENSP00000305223.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306764.11Link to Ensembl Protein Viewer:ENSP00000305223.7Re-query CCDS DB by Nucleotide ID:ENST00000306764Re-query CCDS DB by Protein ID:ENSP00000305223
Original member Current member EBI ENST00000371374.6 ENSP00000360425.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371374.6Link to Ensembl Protein Viewer:ENSP00000360425.1Re-query CCDS DB by Nucleotide ID:ENST00000371374Re-query CCDS DB by Protein ID:ENSP00000360425
Original member Current member NCBI NM_001251973.2 NP_001238902.1 Accepted alive Link to Nucleotide Sequence:NM_001251973.2Link to Protein Sequence:NP_001238902.1Re-query CCDS DB by Nucleotide ID:NM_001251973Re-query CCDS DB by Protein ID:NP_001238902Link to BLAST:NP_001238902.1
Original member Current member NCBI NM_001251974.2 NP_001238903.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001251974.2Link to Protein Sequence:NP_001238903.1Re-query CCDS DB by Nucleotide ID:NM_001251974Re-query CCDS DB by Protein ID:NP_001238903Link to BLAST:NP_001238903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238902.1 243 Q14206-2 243 100% 0 0
NP_001238903.1 243 Q14206-2 243 100% 0 0

Chromosomal Locations for CCDS 59023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 46223141 46223301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46246748 46246919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46248723 46248896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46456752 46456976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAGGGGAGAATCATACTTCATCGGAATGAGGAGCCCAGGGCAGCAGGGACACGTCCCTGAAGATGGAG
GACTTTTCTTACTGTGCTGCATAGACAGGGACTGGGCTGTCACTCGTTGTTTTGCAGAAGAAGCCTTTCA
AGCAATCACTGACTTCAATGACCTCCCCAACTCGTTGTTTGCGTGCAATGTTCACCAGTCAGTGTTTGAA
GGAGAAGAGAGCAAGGAAAAATTTGAGGGACTGTTTCGGACTTATGATGACTGTGTGACGTTCCAGCTAT
TTAAGAGTTTCAGACGTGTCCGTATAAACTTCAGCAATCCTAAATCTGCAGCCCGAGCTAGGATAGAGCT
TCATGAAACCCAATTCAGAGGGAAAAAATTAAAGCTCTACTTTGCACAGGTTCAGACTCCAGAGACAGAT
GGAGACAAACTGCACTTGGCTCCACCCCAGCCTGCCAAACAGTTTCTCATCTCGCCCCCTTCCTCCCCAC
CTGTTGGCTGGCAGCCCATCAACGATGCCACGCCAGTCCTCAACTATGACCTCCTCTATGCTGTGGCCAA
ACTAGGACCAGGAGAGAAGTATGAGCTCCATGCAGGGACTGAGTCCACCCCAAGTGTCGTCGTGCACGTG
TGCGACAGTGACATAGAGGAAGAAGAGGACCCAAAGACTTCCCCAAAGCCAAAAATCATCCAAACTCGGC
GTCCTGGCCTGCCACCCTCCGTGTCCAACTGA

Translation (243 aa):
MRGESYFIGMRSPGQQGHVPEDGGLFLLCCIDRDWAVTRCFAEEAFQAITDFNDLPNSLFACNVHQSVFE
GEESKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETD
GDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHV
CDSDIEEEEDPKTSPKPKIIQTRRPGLPPSVSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH