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Report for CCDS58059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58059.1 Public Homo sapiens 1 ATF3 24 110 108 CCDS HistoryNCBI Gene:467Re-query CCDS DB by CCDS ID:58059.1Re-query CCDS DB by GeneID:467See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000613104.1 ENSP00000480606.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613104.1Link to Ensembl Protein Viewer:ENSP00000480606.1Re-query CCDS DB by Nucleotide ID:ENST00000613104Re-query CCDS DB by Protein ID:ENSP00000480606
Original member Current member EBI ENST00000613954.4 ENSP00000483576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613954.4Link to Ensembl Protein Viewer:ENSP00000483576.1Re-query CCDS DB by Nucleotide ID:ENST00000613954Re-query CCDS DB by Protein ID:ENSP00000483576
Original member Current member NCBI NM_001206484.3 NP_001193413.2 Accepted alive Link to Nucleotide Sequence:NM_001206484.3Link to Protein Sequence:NP_001193413.2Re-query CCDS DB by Nucleotide ID:NM_001206484Re-query CCDS DB by Protein ID:NP_001193413Link to BLAST:NP_001193413.2
Original member Current member NCBI NM_001206488.3 NP_001193417.2 Accepted alive Link to Nucleotide Sequence:NM_001206488.3Link to Protein Sequence:NP_001193417.2Re-query CCDS DB by Nucleotide ID:NM_001206488Re-query CCDS DB by Protein ID:NP_001193417Link to BLAST:NP_001193417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193413.2 124 P18847-5 124 100% 0 0
NP_001193417.2 124 P18847-5 124 100% 0 0

Chromosomal Locations for CCDS 58059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212615193 212615261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212618127 212618234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212619358 212619555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGACAGACCCCTCGGGGTGTCCATCACAAAAGCCGAGG
TAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAGAAAGAAATAAGATTGCAGCTGCAAAGTGCCG
AAACAAGAAGAAGGAGAAGACGGAGTGCCTGCAGAAAGAGTCGGAGAAGCTGGAAAGTGTGAATGCTGAA
CTGAAGGCTCAGATTGAGGAGCTCAAGAACGAGAAGCAGCATTTGATATACATGCTCAACCTTCATCGGC
CCACGTGTATTGTCCGGGCTCAGAATGGGAGGACTCCAGAAGATGAGAGAAACCTCTTTATCCAACAGAT
AAAAGAAGGAACATTGCAGAGCTAA

Translation (124 aa):
MSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAE
LKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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