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Report for CCDS55793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55793.1 Public Homo sapiens 11 TLCD5 24 110 108 CCDS HistoryNCBI Gene:219902Re-query CCDS DB by CCDS ID:55793.1Re-query CCDS DB by GeneID:219902See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375095.3 ENSP00000364236.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375095.3Link to Ensembl Protein Viewer:ENSP00000364236.3Re-query CCDS DB by Nucleotide ID:ENST00000375095Re-query CCDS DB by Protein ID:ENSP00000364236
Original member Current member NCBI NM_001198671.2 NP_001185600.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001198671.2Link to Protein Sequence:NP_001185600.1Re-query CCDS DB by Nucleotide ID:NM_001198671Re-query CCDS DB by Protein ID:NP_001185600Link to BLAST:NP_001185600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185600.1 245 Q6ZRR5-1 245 100% 0 0

Chromosomal Locations for CCDS 55793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120327442 120327640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120329977 120330515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCATTAGCTCTGTGTCTGCAGGTGCTGTGCAGCCTGTGTGGCTGGCTCTCGCTCTATATTTCTTTCT
GCCACCTGAATAAGCACCGAAGCTATGAGTGGAGCTGCCGCCTGGTCACCTTCACCCATGGAGTCCTCTC
TATAGGCCTCTCCGCTTATATTGGCTTCATTGATGGCCCATGGCCTTTTACCCACCCAGGCTCACCCAAT
ACACCTCTCCAAGTTCATGTCCTGTGTCTCACCTTGGGCTACTTCATCTTCGACTTGGGCTGGTGCGTCT
ACTTTCAGTCTGAGGGTGCCTTGATGCTGGCTCATCACACATTGAGTATCTTGGGCATTATCATGGCCCT
TGTGCTTGGGGAGTCTGGCACAGAGGTCAATGCAGTCCTCTTTGGAAGTGAGCTTACCAACCCCTTGCTA
CAGATGCGCTGGTTTCTCCGGGAAACAGGGCACTATCACAGTTTCACTGGAGATGTAGTGGACTTCCTCT
TTGTGGCTCTGTTCACAGGAGTGAGGATTGGTGTGGGAGCTTGCCTCCTTTTCTGTGAAATGGTCTCCCC
CACGCCTAAGTGGTTTGTGAAGGCTGGGGGAGTAGCGATGTATGCTGTGTCTTGGTGTTTCATGTTTAGC
ATCTGGCGCTTTGCATGGAGGAAGAGCATCAAGAAGTACCATGCTTGGAGAAGCAGGCGGAGTGAGGAAC
GGCAGCTGAAACACAACGGACATCTCAAAATACACTAG

Translation (245 aa):
MALALCLQVLCSLCGWLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPN
TPLQVHVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSELTNPLL
QMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPTPKWFVKAGGVAMYAVSWCFMFS
IWRFAWRKSIKKYHAWRSRRSEERQLKHNGHLKIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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