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Report for CCDS57145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57145.1 Public Mus musculus 19 Pdzd7 23 108 98 CCDS HistoryNCBI Gene:100503041Re-query CCDS DB by CCDS ID:57145.1Re-query CCDS DB by GeneID:100503041See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169459.3 ENSMUSP00000133273.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169459.3Link to Ensembl Protein Viewer:ENSMUSP00000133273.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169459Re-query CCDS DB by Protein ID:ENSMUSP00000133273
Original member Current member NCBI NM_001195265.1 NP_001182194.1 Accepted alive Link to Nucleotide Sequence:NM_001195265.1Link to Protein Sequence:NP_001182194.1Re-query CCDS DB by Nucleotide ID:NM_001195265Re-query CCDS DB by Protein ID:NP_001182194Link to BLAST:NP_001182194.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182194.1 1021 E9Q9W7-1 1021 100% 0 0

Chromosomal Locations for CCDS 57145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45027615 45027974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45028379 45028479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45028724 45029323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45029740 45029811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45029980 45030071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45030198 45030289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45033012 45033187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45033635 45033685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45036057 45036254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45036731 45037126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45037539 45037599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45039167 45039314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45039573 45039749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45040161 45040335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45040563 45040703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45045418 45045643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3066 nt):
ATGGCACGTGGTTTCACGGTAGGCTTTGACCCACTGGGTCTAGGAGAACTCAGCTCTGGCTCCCTGAGCT
CTGTCTCCTCCCGAGGCCACCTGGGCAGCGACTCAGGCTCCACAGCAACACGATACCTGCTGAGGAAGCA
GCAGCGCCTGCTGAATGGGCCCTCCCGAGGAATTCGAGCCTCCTCGCCCATGGGCCGGGTCATCCTCATC
AACTCCCCCATCGAAGCCAACAGTGACGAAAGTGACATCATCCACGCCGTTCGCGTGGAGAAGAGCCCCT
CGGGGAGGCTGGGTTTCAGCGTGAGAGGCGGCTCTGAGCATGGCTTGGGTATCTTTGTCAGCAAGGTGGA
GGAGGGAAGCAGCGCAGAGCGGGCTGGCCTGTGTGTGGGAGACAAGATCACGGAGGTGAACGGGCTGAGC
CTAGAGAGCACCACAATGGGGAGCGCTGTGAGGCTGCTGACCAGTAGCAGCTGCCTACACATGATGGTCC
GGCGCATGGGCCGAGTGCCCGGCATCAAGTTCTCCAAGGAGAAGACCACATGGGTGGATGTAGTGAACCG
GAGGCTGGTGGTAGAGAAGTGCAGTTCAACGCCGTCGGACCGCAGCTCGGAAGACGGTGTGCGCCGCATC
GTCCATCTCTATACAACCTCGGATGACTTCTGCCTAGGCTTCAACATCAGAGGGGGCAAAGAGTTTGGCC
TGGGCATCTACGTGTCCAAAGTGGACCATGGGGGGCTGGCTGAAGAGAACGGCATCAAAGTGGGGGACCA
GGTCCTGGCGGCCAACGGTGTCAGGTTCGATGACATCAGCCACAGCCAGGCCGTGGAGGTGCTGAAGGGA
CAAACGCACATCATGTTGACCATCAAGGAGACTGGCCGATACCCTGCCTACAAAGAGATGGTTTCAGAGT
ACTGCTGGCTGGATAGATTGAGCAATGGGGTACTGCAGCAGCTGTCGCCAGCCTCCGAGAGCAGCTCCAG
CGTCTCCTCCTATGCCTCTAGCGCCCCCTGCAGCTCGGGCTCGCTGCCCTCTGACCGCATGGATGTCTGT
CTGGGGCCAGAGGAGCCCACTAGCCATGGCCCAGGCTGGGGGCGGGCAGACACGGCCATGCAGACTGAGC
CTGACCTGGACAGCCGAGTGGAAACTTGGTGCAGCGTAAGGCCGACCGTCATCCTCAGGGACACGGCCAT
CCGCTCGGATGGTCCCTCTTCTACCCGACACCTTGATTCTGCACTTTCAGAGTCCCCCAAGACTGCTCTC
CTTCTGGCCCTCAGCCGACCCAGAACTCCCATCACTCGATCCCAGAGCCACCTGACACTGTGGGAGGAGA
AGAAACAACGGAAGAAGGAGAAGTCGGGATCTTCTGGGGAGAAGGGGGCCTTGCAGCGCTCCAAGACGCT
GATGAACCTCTTCTTCAAGGGAGGGCGGCAGGGGCGGCCAGCAGGGGACGGGCACAGAGAGGCCTGGACA
CTGGACAGCAGAAGCCCCACCAAAGTCCGCCCTCGCCTGGACCTAGAGAAAGCGGGGAGTGTGGGGCCTG
TGCAGAAGTTTGTCACCTGGAGACTAAGACGAGACCGGGAGAGGGGCCGGGCCCTGCTCTCCGCCAGGTC
TGGAAGCCCCTCTGGCCAGGCACCCACTGTGAATGAGCAGGTGCAGGCCTGGGAAAGTCGACGGCCCCTC
ATTCAGGACCTGGCCCGGAGGCTGCTGACAGACGATGAGGTACTAGCAGTCACTCGCCACTGCTCCCGGT
ATGTCCATGAGGGTGGTGTGGAGGATCTGGTGCGCCCCCTGCTGGCCATCCTAGACAGGCCCACGAAGCT
GCTGTTGCTGAGGGACATCAGGAGCGTGGTGGCCCCCACAGACCTTGGCCGCTTCGATAGCATGGTGATG
CCTGTGGAGCTGGAGGCTTTTGAGGCTCTTAAGAGCAGGGCAGTGGGGCCTTCTGCTTTGAGACCTACCA
GGCAAGACACGCCACCCAAACGTCACCTCATCACCCCTGTGCCTGATAGCCGTGGGGGCTTTTACCTGCT
ACCAGTGAACAGCTCAGAGGATGAAGACGGAGAGATAAGGGAGAAGCTTGGGGTCCTTAAGGTCTCCCTC
GGTGCCTCTGCTCCTCACCACAAGGGAATCCCCCCTCTACAAGACGTGCCAGTTGATGCCTTTTCGCTAC
GCCGAGGCGCATGCGCACCTCCTCCCCAGCCACCTCCTGTGGCTCCCCGACCTCCCAGGCCTAACTGGCT
ACTGACAGAACCCCTAAGCAGAGAGGACACTCAGCAGAACCAGAGCCAGACCCCAGCCCAAAGCTGCAGC
CGCAGTCGCAGCCGCAGCCGCAGTCGCAGCCACAGCCGAGGTCAAGGCAAGTCTCCTGGGCGCAGGCGCT
CCCCTTCCCCGGCACCCATCGCCACTGCTGCCACAGCCAACGGGCGTTACCACAGGCCTCGGAAAGCAAG
GCCCCTGCTTCCACGACTTCTGGATGGGCAGGTGGCCAAAGTGGGAGCCAGGCAAGGGCCCTTGGAGAAT
GGTCGGATAGCTGAGGAAGCAGTCGGGAATGTCTCCACTGGAGCGCTGAGGACCATCACACTATCCAAGA
TGAAGCAGTCTTTGGGCATTAGCATCTCTGGGGGCATCGAGTCCAAGGTGCAGCCCATGGTGAAGATAGA
GAAGATCTTTCCCGGAGGTGCAGCTTTCCTCTGCGGGGATCTACAGGCTGGCTTTGAGCTGGTGGCAGTG
GATGGCGAAAGCCTGGAGCAGGTAACCCACCAGCGAGCAGTGGACACCATCCGCAGGGCTTACCGAAACA
AGGCTCGGGAACCTATGGAACTTGTGGTCAGGGTCCCTGGGCCTGGCCTGCTGCCCCTAGCCTCTGACCT
ACGAGTTGTTAAGGACCAGAGCCTTGCTCCTGACTGTCCCTCCGCCCTTGGACCTGTTGATGATGCTCGG
ATTCTCACCCAGCTACCTCCCCCTGAGGCTAGGCAACTCCAGCAGTCTCTCAGCTCAGCTCTAAAGGTCC
CTCAAAGTATCCCTAAACTCTCCCCTATACTTAAGGATCCCCATGACCCTTCCTAG

Translation (1021 aa):
MARGFTVGFDPLGLGELSSGSLSSVSSRGHLGSDSGSTATRYLLRKQQRLLNGPSRGIRASSPMGRVILI
NSPIEANSDESDIIHAVRVEKSPSGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS
LESTTMGSAVRLLTSSSCLHMMVRRMGRVPGIKFSKEKTTWVDVVNRRLVVEKCSSTPSDRSSEDGVRRI
VHLYTTSDDFCLGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKG
QTHIMLTIKETGRYPAYKEMVSEYCWLDRLSNGVLQQLSPASESSSSVSSYASSAPCSSGSLPSDRMDVC
LGPEEPTSHGPGWGRADTAMQTEPDLDSRVETWCSVRPTVILRDTAIRSDGPSSTRHLDSALSESPKTAL
LLALSRPRTPITRSQSHLTLWEEKKQRKKEKSGSSGEKGALQRSKTLMNLFFKGGRQGRPAGDGHREAWT
LDSRSPTKVRPRLDLEKAGSVGPVQKFVTWRLRRDRERGRALLSARSGSPSGQAPTVNEQVQAWESRRPL
IQDLARRLLTDDEVLAVTRHCSRYVHEGGVEDLVRPLLAILDRPTKLLLLRDIRSVVAPTDLGRFDSMVM
PVELEAFEALKSRAVGPSALRPTRQDTPPKRHLITPVPDSRGGFYLLPVNSSEDEDGEIREKLGVLKVSL
GASAPHHKGIPPLQDVPVDAFSLRRGACAPPPQPPPVAPRPPRPNWLLTEPLSREDTQQNQSQTPAQSCS
RSRSRSRSRSHSRGQGKSPGRRRSPSPAPIATAATANGRYHRPRKARPLLPRLLDGQVAKVGARQGPLEN
GRIAEEAVGNVSTGALRTITLSKMKQSLGISISGGIESKVQPMVKIEKIFPGGAAFLCGDLQAGFELVAV
DGESLEQVTHQRAVDTIRRAYRNKAREPMELVVRVPGPGLLPLASDLRVVKDQSLAPDCPSALGPVDDAR
ILTQLPPPEARQLQQSLSSALKVPQSIPKLSPILKDPHDPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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