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Report for CCDS17209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17209.1 Public Mus musculus 2 Arfrp1 23 108 98 CCDS HistoryNCBI Gene:76688Re-query CCDS DB by CCDS ID:17209.1Re-query CCDS DB by GeneID:76688See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108808.7 ENSMUSP00000104436.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108808.7Link to Ensembl Protein Viewer:ENSMUSP00000104436.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108808Re-query CCDS DB by Protein ID:ENSMUSP00000104436
Original member Current member EBI ENSMUST00000127988.7 ENSMUSP00000122066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127988.7Link to Ensembl Protein Viewer:ENSMUSP00000122066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127988Re-query CCDS DB by Protein ID:ENSMUSP00000122066
Original member Current member NCBI NM_001165991.1 NP_001159463.1 Accepted alive Link to Nucleotide Sequence:NM_001165991.1Link to Protein Sequence:NP_001159463.1Re-query CCDS DB by Nucleotide ID:NM_001165991Re-query CCDS DB by Protein ID:NP_001159463Link to BLAST:NP_001159463.1
Original member Current member NCBI NM_001165992.1 NP_001159464.1 Accepted alive Link to Nucleotide Sequence:NM_001165992.1Link to Protein Sequence:NP_001159464.1Re-query CCDS DB by Nucleotide ID:NM_001165992Re-query CCDS DB by Protein ID:NP_001159464Link to BLAST:NP_001159464.1
Original member Current member NCBI NM_029702.4 NP_083978.3 Accepted alive Link to Nucleotide Sequence:NM_029702.4Link to Protein Sequence:NP_083978.3Re-query CCDS DB by Nucleotide ID:NM_029702Re-query CCDS DB by Protein ID:NP_083978Link to BLAST:NP_083978.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159463.1 201 Q8BXL7 201 100% 0 0
NP_001159464.1 201 Q8BXL7 201 100% 0 0
NP_083978.3 201 Q8BXL7 201 100% 0 0

Chromosomal Locations for CCDS 17209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181359474 181359561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181359639 181359739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181361001 181361071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181361391 181361472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181364014 181364096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181364311 181364398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181364605 181364697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGTACACGCTGCTTTCGGGATTGTACAAGTACATGTTCCAGAAGGATGAATACTGCATCCTGATCCTGG
GCCTGGACAATGCTGGGAAGACGACTTTCCTGGAACAGTCAAAAACACGCTTTAACAAGAACTACAAGGG
GATGAGTCTATCCAAAATCACCACTACCGTGGGTCTAAACATTGGCACTGTGGACGTGGGAAAGGCTCGT
CTCATGTTTTGGGACTTAGGTGGGCAGGAAGAGCTGCAGTCTTTGTGGGACAAGTACTATGCAGAGTGCC
ATGGTGTCATCTATGTAATTGATTCCACTGATGAAGAAAGGCTGTCAGAATCAAAAGAGGCATTTGAGAA
GGTGGTTTCGAGTGAAGCACTGGACGGTGTTCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGAGACT
TGCCTCTCCATTCCTGACATCAAGACTGCATTCAGTGACTGTACCTGTAAGATTGGCCGGCGAGATTGTC
TGACCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTCGAGAGGGCATCGAATGGATGGTGAAGTGTGT
CGTGCGGAATGTTCACCGGCCACCACGGCAGAGGGACATCACATAA

Translation (201 aa):
MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKAR
LMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVET
CLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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