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Report for CCDS50866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50866.1 Public Mus musculus 3 Lrrcc1 23 108 98 CCDS HistoryNCBI Gene:71710Re-query CCDS DB by CCDS ID:50866.1Re-query CCDS DB by GeneID:71710See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50866.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169079.7 ENSMUSP00000126560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169079.7Link to Ensembl Protein Viewer:ENSMUSP00000126560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169079Re-query CCDS DB by Protein ID:ENSMUSP00000126560
Original member Current member NCBI NM_001163579.1 NP_001157051.1 Accepted alive Link to Nucleotide Sequence:NM_001163579.1Link to Protein Sequence:NP_001157051.1Re-query CCDS DB by Nucleotide ID:NM_001163579Re-query CCDS DB by Protein ID:NP_001157051Link to BLAST:NP_001157051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157051.1 1026 Q69ZB0-1 1026 99.8051% 0 2

Chromosomal Locations for CCDS 50866.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14533934 14534022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14535999 14536204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14536474 14536539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14537210 14537377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14539629 14539804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14539911 14540114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14545496 14545692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14547247 14547394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14548108 14548256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14550251 14550455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14551388 14551527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14554304 14554505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14557189 14557374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14558251 14558425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14559228 14559391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14562124 14562332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14562424 14562561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14562959 14563094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14565733 14565855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3081 nt):
ATGGAGGCGGCGGTGTGTAGCGAAATCGAACGGGAGGATGGCGACAGCAGCTGCGGGGATGTGTGTTTCA
TGGACAAAGGCCTGCACAGTATATCAGAGTTATCTTTAGATTCATCCATTCATGCCATCAATTTGCATTG
TAATAACATCTCCAAGATCTCATCCATTGACCACATTTGGAACCTACGACATTTAGATCTGTCATCTAAT
CAAATAAGTCAAATTGAAGGCCTGAACACACTGACAAAGCTATGCACTTTAAATTTGTCCTGCAATTTGA
TCACAAGAGTGGAAGGACTTGAAGCACTGGTTAATCTGACTAAACTGAACTTGTCTTATAATCACATAAA
TGATCTTAGTGGGTTGATGCCCCTTCATGGACTAAAGTATAAACTTAGATATATTGACCTCCATAGTAAT
TATATAGATAGCATCCATCACTTACTTCAGTGTACAGTAGGATTGCACTTCCTAACCAATCTTATTTTAG
AGAAAGATGGAGAAGGTAATCCTATCTGCCTTATACCAGGGTACCGAGCAATCATTCTCCAGACTTTACC
ACAACTGAGAATCTTAGATTGCAAGAATATATTTGGAGAGCCAGTAAGCTTGGAAGAAATAAACTCATCC
CATCTACAGTGCTTAGAAGGACTTTTGGATAACTTAGTTTCTTCTGATTCCCCCCTGAATATAAGTGAAG
ATGAGGTCAATGATGATGTGTCAGCACCACCAATGGATGTGTTGCCTTCTTTGAAGGAATTTAAAAGTAC
ACCAGAAGACAATGTTTTAGCCTCACTTTTATCTGTGTGTCCATCTTCTGAACCAGAAAAAATTAATCAG
GAAAACGACTTTCAGAATGAGGTGAAACTTCAGAAATTAGATGACCAAATCCTACAGCTTCTCAATGAAA
CTAATAATTCCTTAATAGATAATGTTCCTGAGAAAGACCTCAGACCAAAAAGAGACACAGATATAACTTC
TGAAAGTGACTATGGAAACAGAAGAGAGTGCAGCAGAAAAGTTCCCAGGAGAACAAAAATCCCATATTAT
TCCAGAACTATTCAAACCATTAAGCACCACAATAAAAACAATGGTGCTTTTGTAAGTTGTAATCGTAAAA
TGAGACAGCCTTACCTTAGAGATTTATATGTAAGATCATCTTTAGTAAACTGTAATAACTTACGAGACTT
AGATGAGCAGAAGACTGGCGTAATTAAAGTAGACAAGAACTTCTCGGACAACAGCACCTACCGGTCCCTC
GTGGAACAGTTAGACCAAGAGAGAGAGATGCGGTGGAAAGCTGAGCAAACGGAAAAGAAACTTATGGATT
ATATCGATGAGCTACATAAGCAAGCAGATGAGAAAAAAGATGTTCACAGCCAGGCTCTCATTACCACAGA
TAGACTAAAGGATGCTATTTTTAAGGAGAGACATTGCAAGGCTCAACTTGAAATTATAGTTCACAGACTT
CAAAATGAAGTTAAAAAACTAACTATTGAATTAATGAAAGCGCGAGATCAACAGGAAGATCACATCAGAC
ACCTGAGAACCCTGGAAAGGGCATTGGAAAAAATGGAGAAGCAGAAAGCACAGCAGCAGGCGGCACAGAT
AAGACTGATCCAAGAGGTGGAGCTCAAAGCCTCAGCTGCTGATCGAGAAATAAACTTACTTCGAACTTCT
CTTCACCAAGAAAAGCAGCAAGTGCAACAACTTCATGAACTTCTGGCGTTGAAAGAGCAGGAACACAGGC
AAGAAATTGAAACTCGGCAGTTTTTCACTGATGCTGAGTTCCAGGATGCATTAACTAAACGATTATGCAA
AGAAGAACGAAAACATGAGCAAGAAGTAAAAGAATACCAAGAAAAAATTGATATATTAAACCAGCAGTAT
TTGGACTTAGAAAATGAGTTCCGTATTGCTTTAACTGTTGAAGCTAGAAGATTTAAAGATGTTCAGGATG
GCTTTGAAGATGTTGCGACTGAGTTAGCGAAGAGTAAACATGCTCTTATTTGGGCTCAGCGTAAAGAAAA
TGAGTCGTCTTCTTTAATTAAAGATCTGACATGTATGGTGAAGGAACAGAAGACAAAGCTCTCCGAAGTC
TGCAAACTGAAGCAGGAAGCAGCAGCCAATTTACAGAATCAAATCAACACTCTTGAAATTTTGATTGAAG
ATGACAAGCAGAAGAGCATTCAAATAGAACTTCTCAAACATGAAAAAACCCAGCTGATTTCTGAGCTGGC
AGCCAAAGAGTCACTGATTTATGGCTTACGGACTGAGAGAAAAGTATGGGGACAGGAACTGGCATGTCAG
AGCTCGACACTATCCCAGAGTCGTGGGAAATTAGAAGCCCAGATTGAAAGTTTATGCAGAGAAAATGAAT
CTCTGAGAAAAAGCCATGAAAGTGACTGTGATGCATTGAGAATAAAGTGCAAGATCATTGAAGACCAAAA
TGAAACCATCCGGAAACTAAAAGACAGTTTACAAGAAAAAGATGGGCAAATCAAATTGCTACAAGAACAG
ATCGCTCTCATCGAAAAGTGTTCTCAAGAGCAACTTAATGAAAAGTCTTCACAACTAGATTCTATAGTTG
AGAAACTAGAGAGACACAATGAGAGAAAGGAAAAATTAAAGCAACAGTTGAAAGCAAAGGAATTAGAACT
TGAAGAAATCAGAAAAGCTTACAGCACACTAAATAAGAAATGGCATGATAAAGGAGAACTACTCTCTCAT
CTTGAAATGCAAGTAAAAGAAGTAAAAGAAAAATTTGAAGACAAGGAAAGGAAACTGAAAGCAGAGAGAG
ACAAAAGTCTTGAGCTACAAAAGGATGCAATGGAAAAGCTTCAGAACATGGATGATGCCTTTAGAAGACA
AGTGGATGAGATTGTGGAAGCGCACCAAGCTGAAATAATGCAGCTAGCAAATGAGAAGCAGAAGTATATT
GACTGTGCAAATTTAAAGGTTCAACAAGTTGAAGACGAAATGCGAGGACTTCTGGACGAAACATGCAAGA
ACAAAAAAATGATGGAAGAAAAAATTAAGCAACTTGCTTGTGCTATAAGTGAGATACAGAAAGAAATGTG
A

Translation (1026 aa):
MEAAVCSEIEREDGDSSCGDVCFMDKGLHSISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSN
QISQIEGLNTLTKLCTLNLSCNLITRVEGLEALVNLTKLNLSYNHINDLSGLMPLHGLKYKLRYIDLHSN
YIDSIHHLLQCTVGLHFLTNLILEKDGEGNPICLIPGYRAIILQTLPQLRILDCKNIFGEPVSLEEINSS
HLQCLEGLLDNLVSSDSPLNISEDEVNDDVSAPPMDVLPSLKEFKSTPEDNVLASLLSVCPSSEPEKINQ
ENDFQNEVKLQKLDDQILQLLNETNNSLIDNVPEKDLRPKRDTDITSESDYGNRRECSRKVPRRTKIPYY
SRTIQTIKHHNKNNGAFVSCNRKMRQPYLRDLYVRSSLVNCNNLRDLDEQKTGVIKVDKNFSDNSTYRSL
VEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRL
QNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTS
LHQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQY
LDLENEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEV
CKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQ
SSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQ
IALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSH
LEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYI
DCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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