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Report for CCDS53127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53127.1 Public Mus musculus X Tasl 23 108 98 CCDS HistoryNCBI Gene:71398Re-query CCDS DB by CCDS ID:53127.1Re-query CCDS DB by GeneID:71398See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113976.1 ENSMUSP00000109609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113976.1Link to Ensembl Protein Viewer:ENSMUSP00000109609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113976Re-query CCDS DB by Protein ID:ENSMUSP00000109609
Original member Current member NCBI NM_001163539.1 NP_001157011.1 Accepted alive Link to Nucleotide Sequence:NM_001163539.1Link to Protein Sequence:NP_001157011.1Re-query CCDS DB by Nucleotide ID:NM_001163539Re-query CCDS DB by Protein ID:NP_001157011Link to BLAST:NP_001157011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157011.1 298 Q9D3J9 298 100% 0 0

Chromosomal Locations for CCDS 53127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 85887830 85888726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGCTATCAGAAGGATATCTCAGTGGACTTACCTACTGGAATGACATTCATTGGAATTGTGCATCTTATA
ATGAACCGGTGGCTGGGGACCAAGGCAAAGAGACAAGTTCTGTTGCTGCTCTTTCATATTCCTCTGTGGA
TGAAACACAAGTTCAAAGTCTTTATGTGAGCTGCAAATCCTCTGGGAAGTTTATTTCATCAGTGCATGCA
AGGGCGAGTCAGCACAGCAGAAGCCAGAGCAGAACAGTGCTGCAGGCAAACAGCAACCCTGTATTTGAAA
GTCCAACTTTAGCTGCAGTTGGTATATGCAGAGATGTGATCAGGGAGACCTACTTGGTTCCACCTTCTTG
TAAAAGTATTTGCAAAAATTACAACGACTTACATATTGCAGGGGGACAGGTGATGGCCATTAACTCAGTA
ATGGCAAATTTCCCCTCTGAGAGCAGCTTTGAAGATGGTCCTTTGCTAAAGTCATCTGAGATTTCTTTGT
CCATGGAGGATTCCACTTCCACTCAGCTCACTGAACTTCCCCTCAAACCTATCCAGCGGTACTCATCCTA
CTGGAGGATAACCAGCATCAAAGAGAAAAGCAGCCTGCAAATGCAGAAGCCTATTTCAAATGCAGTGCTC
AATGAGTACCTGGAGCAGAAGGTGGTGGAATTGTATAAGCAATATATTATGGACACTGTGTTTCATGACA
GTTCTCCTACCCAGATTCTGGCATCAGAATTCATCATGACGAATGTAGATCAAATTAGTCTTCAAGTGTC
TAAAGAGAAGAACCTGGACACTTCAAAAGTCAAGGACATAGTTATTAGCCACCTGTTGCAGTTGGTATCA
TCTGAGATCAGCACCCCTAGTCTTCATATTTCTCAGTATAGCAATATAACTCCATAG

Translation (298 aa):
MLSEGYLSGLTYWNDIHWNCASYNEPVAGDQGKETSSVAALSYSSVDETQVQSLYVSCKSSGKFISSVHA
RASQHSRSQSRTVLQANSNPVFESPTLAAVGICRDVIRETYLVPPSCKSICKNYNDLHIAGGQVMAINSV
MANFPSESSFEDGPLLKSSEISLSMEDSTSTQLTELPLKPIQRYSSYWRITSIKEKSSLQMQKPISNAVL
NEYLEQKVVELYKQYIMDTVFHDSSPTQILASEFIMTNVDQISLQVSKEKNLDTSKVKDIVISHLLQLVS
SEISTPSLHISQYSNITP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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