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Report for CCDS53100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53100.1 Public Mus musculus X Arhgap4 23 108 98 CCDS HistoryNCBI Gene:171207Re-query CCDS DB by CCDS ID:53100.1Re-query CCDS DB by GeneID:171207See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114407.8 ENSMUSP00000110049.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114407.8Link to Ensembl Protein Viewer:ENSMUSP00000110049.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114407Re-query CCDS DB by Protein ID:ENSMUSP00000110049
Original member Current member NCBI NM_001162424.1 NP_001155896.1 Accepted alive Link to Nucleotide Sequence:NM_001162424.1Link to Protein Sequence:NP_001155896.1Re-query CCDS DB by Nucleotide ID:NM_001162424Re-query CCDS DB by Protein ID:NP_001155896Link to BLAST:NP_001155896.1

Chromosomal Locations for CCDS 53100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73894736 73894963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73895948 73896047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73896394 73896486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73896814 73896997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897081 73897154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897229 73897462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897553 73897658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897754 73897888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897969 73898046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73898132 73898192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73899541 73899643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73899845 73899872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73900099 73900183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73900278 73900469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73900635 73900736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73904248 73904469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73904580 73904708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73905651 73905863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73906429 73906591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73906669 73906876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73911163 73911229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGGCGGCGCACGGGAAGTTGCGGCGGGAGCGGGGGCTACAACCTGAGTATGACGCACAGGTCAAAGAGA
TGCGCTGGCAGTTGAGTGAGCAGCTTCATTGCCTGGAGCTTCAGGGAGAGCTTCGGCGGGATTTGCTGCA
GGAGCTAGCTGAGTTCATGCGGCGCCGGGCGGAGGTAGAACTGGAGTATTCTCGGGGCCTGGACAAGTTG
GCTGAACGCTTTACCAGCCGCAGTGGTCGCCTTGGGGGCAGCAGCCAGGAGCAGCAAAGCTTCCGGAAGG
AGCCGACTCTCCTGTCACCCTTGCACTGCTGGGCTGTGCTGCTGGAACACACTCGGCAGCAGAGTCGGGA
AAGTGCTGCCCTCAGTGAGGTGCTGGCTGGGCCCCTGGCACAGCGCCTAAGTCACATCAGCGAAGATGTG
GGACGTATTGTCAAAAAGACCAAGAAGATGTACCATGTGTACCACTCAGAGAGCATGAATGCTGAGACTA
AACTTCGGGAAGCGGAGCGGCAAGAGGAGAAGCGGTCAGGCAGGAGTGCCTTATCCACCACCACTACTAC
TTCTGCCACCACCACCACTACTACCACCACCGTTGAGACAGGGCCCCACCGAAAGAGCTCTCTCAAGAAA
GGAGGGCGGCTAGTGGAGAAGCGTCAGGCCAAGTACTTGGAGCATAAACTTAAGTGCACCAAGGCCCGAA
ATGAGTACCTGCTCAGCCTGGCCAGTGTCAATGCCGCCATCAGCAACTACTACTTACACGATATCTTGGA
TCTCATGGATTGCTGTGACACAGGTTTCCATTTGGCCCTGGAGCAGGCCCTCCGGAGCTACACAGCTGCT
GAGAGCCGTACCCAAACCTCCCAGATGCAGGGCTTAGGCAGCCTGGAAGAGGCTCTGGAGGCTTTGGATC
CTCCAGGGGACAAGGCCAAGGTGCTTGAGGTTCATGCCATGGCCTTCTGTCCCCCTCTACGTTTTGAATA
CCAGCCCCATGAAGATGATGAGGTGGCCGAGGTCCTGATTGAGATGGAACTGTGGGATGAGATTTTGCCC
AGAGCTCAAAACATTCAGAGTCGCCTGGACCAAAAGACCATCGAGACAGAAGAGGTGAATAAGACACTGA
AGGCAACACTTAAGGCTCTGCTAGAGGCGGTGGCATCAGAGGATGGGGACATACTGGACTCTTTGCAGGC
CAGCCCCTCCACTGAGTCCCTCAAGTCTACAAGCTCGGACCCAGGCACCCGACAGACAGGCCGTAGACGG
AACCAGCAGCAGGAGACAGAAACCTTCTATATTACGAAGCTGCAGGAATATCTGAGTGGCCGGAGCATCC
TTTCCAAGCTGCAGGCCAAGCATGAAAAACTTCAGGAAGCCATACAACAAGGTAACAAGGAAAAGCAAGA
GACATCTCGGACCCAGTGCACAGAGAGAAAATTCCACAAGAGCCATCCCCCCCATCCTAGATTCCAGTAT
AATCAGAGACTTTTTGGAGGTGATCTGGAGAAGTTTATCCAGAGCTCAGGCCAACCTGTGCCCCTTGTGG
TGGAGAGCTGTATTCGCTTCATTAATCTCAATGGCCTGCAACATGAAGGCATTTTCCGGGTATCAGGTGC
CCAGGCCAGGATCTCAGAGATCCGAGATGCCTTTGAAAGAGGGGAGGACCCTCTGGAGAAAGGCTGTACT
GTCCATGACCTAGACTCAGTGGCTGGGGTACTAAAGCTGTACTTTCGGAGCCTGGAGCCCCCACTCTTCC
CCTTGGACATGTTTAATGAGCTGCTGGCTTCAGCAGAACTGGAAGTTGTGGGTGAGCGAGTAGAGCCTGT
GAGCCATCTGCTATTCAAACTACCCAGACCTGTGCTAGTGGTCCTACGCTATCTCTTCACCTTCCTCAAC
CACCTGGCCCAGTACAGTGATGAGAACATGATGGACTCCTACAACCTGGCTGTATGTTTTGGGCCTACAC
TGTTGCCTGTGCCTGCTGGGCAAGACCCAGTAGCCTTGCAAGGCCGAGTGAACCAGCTGGTCCAGACCCT
TATCCTGCAACCAGCACGGATTTTCCCACCTCCAGCCATGCTGCCAGGCCCCATCTATGAGAAATGCATG
GCACCACCTTCTGCCAGCTGCCTGGGGGATGGCCAGTTGGAGAGCCTCATTGGGGAGCCAGAGCTGGAGT
TGAAAACTGGGACCACAGCTCAGGAGGATGACCAGGAGGGAGTTTTGGAGGCTGTGGCCTGCTTTGCCTA
CACTGGTCGTACGGCCCAGGAGCTGACATTCCAGCGAGGGGATGTGCTGCGATTGTATGCTCGGGCATCA
AGTGACTGGTGGCGAGGGGAGCATGCTGGTGTGCAGGGGCTCATTCCCCATAAGTACATCACACTTTGTG
AGGGGGATGAGAAGCAGATGGCTGGTTCAGGACTACAGGCCATGGGGGAATCTGTGAGCCATCCAGAGGG
CTTCCTGACGTTGGAGTTTGCCAACCGGTTGGAACTAGGCACCCCACCTGAGGCTTTGGGCCCCTCTAGG
CACAGACGACCCTGTTTAGTCCCTACCTCCCCTGAAGGACATGTGGAAATGGATAAGGCTGTGGCACAGA
ACATGAATTCTGTGTTTAAGGAGCTCTTGGGAAAGACTGCTGTCCGCCAGGGCCATGGGTTAGCATCTAC
AGCCTCCCCGAGTCTAGGAACTCTGACGCCCCTGGCCTGCAGCAGCATCAGCAAAAACAAAGTCTTCTCC
CGGGGACCTGGGGCTCCAATTTCCCCCTCAACCTCCCATCCCCAGGGTCCAGATTCAACTCGCAAGCCAG
TCTGA

Translation (934 aa):
MAAHGKLRRERGLQPEYDAQVKEMRWQLSEQLHCLELQGELRRDLLQELAEFMRRRAEVELEYSRGLDKL
AERFTSRSGRLGGSSQEQQSFRKEPTLLSPLHCWAVLLEHTRQQSRESAALSEVLAGPLAQRLSHISEDV
GRIVKKTKKMYHVYHSESMNAETKLREAERQEEKRSGRSALSTTTTTSATTTTTTTTVETGPHRKSSLKK
GGRLVEKRQAKYLEHKLKCTKARNEYLLSLASVNAAISNYYLHDILDLMDCCDTGFHLALEQALRSYTAA
ESRTQTSQMQGLGSLEEALEALDPPGDKAKVLEVHAMAFCPPLRFEYQPHEDDEVAEVLIEMELWDEILP
RAQNIQSRLDQKTIETEEVNKTLKATLKALLEAVASEDGDILDSLQASPSTESLKSTSSDPGTRQTGRRR
NQQQETETFYITKLQEYLSGRSILSKLQAKHEKLQEAIQQGNKEKQETSRTQCTERKFHKSHPPHPRFQY
NQRLFGGDLEKFIQSSGQPVPLVVESCIRFINLNGLQHEGIFRVSGAQARISEIRDAFERGEDPLEKGCT
VHDLDSVAGVLKLYFRSLEPPLFPLDMFNELLASAELEVVGERVEPVSHLLFKLPRPVLVVLRYLFTFLN
HLAQYSDENMMDSYNLAVCFGPTLLPVPAGQDPVALQGRVNQLVQTLILQPARIFPPPAMLPGPIYEKCM
APPSASCLGDGQLESLIGEPELELKTGTTAQEDDQEGVLEAVACFAYTGRTAQELTFQRGDVLRLYARAS
SDWWRGEHAGVQGLIPHKYITLCEGDEKQMAGSGLQAMGESVSHPEGFLTLEFANRLELGTPPEALGPSR
HRRPCLVPTSPEGHVEMDKAVAQNMNSVFKELLGKTAVRQGHGLASTASPSLGTLTPLACSSISKNKVFS
RGPGAPISPSTSHPQGPDSTRKPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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