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Report for CCDS48693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48693.1 Public Mus musculus 10 Ptprr 23 108 98 CCDS HistoryNCBI Gene:19279Re-query CCDS DB by CCDS ID:48693.1Re-query CCDS DB by GeneID:19279See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128399.1 ENSMUSP00000114455.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128399.1Link to Ensembl Protein Viewer:ENSMUSP00000114455.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128399Re-query CCDS DB by Protein ID:ENSMUSP00000114455
Original member Current member EBI ENSMUST00000148731.7 ENSMUSP00000120965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148731.7Link to Ensembl Protein Viewer:ENSMUSP00000120965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148731Re-query CCDS DB by Protein ID:ENSMUSP00000120965
Original member Current member EBI ENSMUST00000155606.7 ENSMUSP00000122259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155606.7Link to Ensembl Protein Viewer:ENSMUSP00000122259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155606Re-query CCDS DB by Protein ID:ENSMUSP00000122259
Original member NCBI NM_001161838.1 NP_001155310.1 Updated not alive Link to Nucleotide Sequence:NM_001161838.1Link to Protein Sequence:NP_001155310.1Re-query CCDS DB by Nucleotide ID:NM_001161838Re-query CCDS DB by Protein ID:NP_001155310
Current member NCBI NM_001161838.2 NP_001155310.1 Accepted alive Link to Nucleotide Sequence:NM_001161838.2Link to Protein Sequence:NP_001155310.1Re-query CCDS DB by Nucleotide ID:NM_001161838Re-query CCDS DB by Protein ID:NP_001155310Link to BLAST:NP_001155310.1
Original member NCBI NM_001161839.1 NP_001155311.1 Updated not alive Link to Nucleotide Sequence:NM_001161839.1Link to Protein Sequence:NP_001155311.1Re-query CCDS DB by Nucleotide ID:NM_001161839Re-query CCDS DB by Protein ID:NP_001155311
Current member NCBI NM_001161839.2 NP_001155311.1 Accepted alive Link to Nucleotide Sequence:NM_001161839.2Link to Protein Sequence:NP_001155311.1Re-query CCDS DB by Nucleotide ID:NM_001161839Re-query CCDS DB by Protein ID:NP_001155311Link to BLAST:NP_001155311.1
Original member NCBI NM_001161840.1 NP_001155312.1 Updated not alive Link to Nucleotide Sequence:NM_001161840.1Link to Protein Sequence:NP_001155312.1Re-query CCDS DB by Nucleotide ID:NM_001161840Re-query CCDS DB by Protein ID:NP_001155312
Current member NCBI NM_001161840.2 NP_001155312.1 Accepted alive Link to Nucleotide Sequence:NM_001161840.2Link to Protein Sequence:NP_001155312.1Re-query CCDS DB by Nucleotide ID:NM_001161840Re-query CCDS DB by Protein ID:NP_001155312Link to BLAST:NP_001155312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155310.1 412 Q62132-3 412 100% 0 0
NP_001155311.1 412 Q62132-3 412 100% 0 0
NP_001155312.1 412 Q62132-3 412 100% 0 0

Chromosomal Locations for CCDS 48693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116177826 116177828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116188200 116188468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116226159 116226345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116229483 116229567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116236679 116236758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116237231 116237368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116251112 116251222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116252819 116252976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116256130 116256243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116273733 116273826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGATTATTTACAGGTTAAAAGAAAGGCTTCAGCTTTCCTTAAGACAAGATAAAGAGAAAAACCAGGAGA
TCCACCTATCACCCATTGCACGGCAGCAAGCACAATCGGAGGCCAAGACGACCCACAGCATGGTCCAGCC
CGATCAGGCGCCAAAGGTGCTGAACGTGGTTGTGGACCCTCAAGGCCAATGCACTCCTGAGATTCGAAAC
AGCACCTCCACCTCTGTCTGCCCTTCTCCCTTCAGAATGAAGCCCATAGGACTCCAGGAGCGACGAGGTT
CCAATGTATCTCTTACGCTGGACATGAGTAGCCTGGGCAGTGTGGAACCCTTTGTGGCCGTCTCAACCCC
CCGGGAGAAGGTAGCCATGGAATACCTGCAGTCAGCCAGCCGAGTTCTCACACGGTCACAGCTGAGGGAC
GTCGTGGCAAGTTCCCACCTACTTCAAAGTGAATTCATGGAAATACCAATGAATTTTGTGGATCCCAAAG
AAATTGATATTCCACGTCACGGAACTAAAAATCGTTATAAGACCATTTTGCCAAATCCCCTCAGCAGAGT
GTGCTTAAGACCAAAAAATATAACCGATTCCTTGAGTACTTACATAAATGCTAACTATATTCGGGGCTAC
AGTGGTAAGGAGAAAGCCTTCATTGCCACCCAGGGCCCCATGATCAACACTGTGAATGACTTCTGGCAGA
TGGTGTGGCAAGAAGACAGTCCCGTGATTGTGATGATCACGAAACTCAAAGAGAAAAATGAGAAATGTGT
GCTCTACTGGCCAGAAAAGAGAGGGATTTACGGCAAGGTTGAGGTTCTGGTCACCGGTGTGACCGAATGT
GATAACTACACCATCCGCAACCTCGTCTTAAAGCAAGGAAGTCACACCCAACATGTGAAGCACTACTGGT
ACACTTCATGGCCGGATCATAAGACTCCAGACAGTGCCCAGCCCCTTCTGCAGCTCATGTTGGATGTGGA
AGAAGACAGACTGGCCTCTGAAGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCGGGGATTGGGAGAACT
GGGTGTTTCATCGCTACATCCATTGGCTGTCAACAATTGAAAGAAGAAGGAGTTGTAGACGCACTAAGTA
TTGTCTGCCAGCTTCGTGTAGACAGGGGTGGTATGGTCCAAACCAGCGAGCAGTATGAATTTGTGCACCA
TGCTCTGTGCCTGTTCGAGAGCAGACTTTCACCAGAAACTGTCGAGTGA

Translation (412 aa):
MIIYRLKERLQLSLRQDKEKNQEIHLSPIARQQAQSEAKTTHSMVQPDQAPKVLNVVVDPQGQCTPEIRN
STSTSVCPSPFRMKPIGLQERRGSNVSLTLDMSSLGSVEPFVAVSTPREKVAMEYLQSASRVLTRSQLRD
VVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGY
SGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVTGVTEC
DNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRT
GCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHALCLFESRLSPETVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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