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Report for CCDS18382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18382.1 Public Mus musculus 4 Atg4c 23 108 98 CCDS HistoryNCBI Gene:242557Re-query CCDS DB by CCDS ID:18382.1Re-query CCDS DB by GeneID:242557See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030279.14 ENSMUSP00000030279.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030279.14Link to Ensembl Protein Viewer:ENSMUSP00000030279.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030279Re-query CCDS DB by Protein ID:ENSMUSP00000030279
Original member Current member EBI ENSMUST00000180278.1 ENSMUSP00000137035.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180278.1Link to Ensembl Protein Viewer:ENSMUSP00000137035.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180278Re-query CCDS DB by Protein ID:ENSMUSP00000137035
Original member Current member NCBI NM_001145967.1 NP_001139439.1 Accepted alive Link to Nucleotide Sequence:NM_001145967.1Link to Protein Sequence:NP_001139439.1Re-query CCDS DB by Nucleotide ID:NM_001145967Re-query CCDS DB by Protein ID:NP_001139439Link to BLAST:NP_001139439.1
Original member Current member NCBI NM_175029.3 NP_778194.3 Accepted alive Link to Nucleotide Sequence:NM_175029.3Link to Protein Sequence:NP_778194.3Re-query CCDS DB by Nucleotide ID:NM_175029Re-query CCDS DB by Protein ID:NP_778194Link to BLAST:NP_778194.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139439.1 458 Q811C2 458 100% 0 0
NP_778194.3 458 Q811C2 458 100% 0 0

Chromosomal Locations for CCDS 18382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99212636 99212711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99215878 99215961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99217965 99218198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99221192 99221522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99222873 99222943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99224414 99224550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99228556 99228634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99229488 99229564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99235067 99235186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99258397 99258564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGAGGCTTCAGGAACAGATGAAGTTGACAAGCTAAAAACTAAATTTATATCTGCTTGGAACAATATGA
AATATAGTTGGGTGTTGAAAACAAAGACATATTTTAGTAGAAATTCACCTGTTTTATTGCTTGGAAAATG
TTATCATTTTAAATATGAAGATGAAAGCAAGATGTTGCCTGCAAGATCAGGATGTGCCATTGAAGATCAT
GTAATTGCAGGGAATGTGGAAGAGTTCCGTAAGGATTTCATTTCTAGAATATGGCTGACCTACAGGGAAG
AATTTCCTCAAATCGAAGCTTCAGCCTTGACGACAGACTGTGGCTGGGGCTGCACGCTGCGGACCGGCCA
GATGCTGCTGGCTCAGGGACTCATACTCCATTTTCTCGGTAGAGCTTGGACCTGGCCTGATGCGCTGCAC
ATTGAGAACGCAGACTCTGACTCATGGACTTCCAACACTGTCAAAAAGTTTACTGCATCGTTTGAAGCTT
CACTTTCGGGGGACAGAGAACTCAGAACTCCAGCAGTTTCTCTGAAGGAAACATCTGGGAAGTGTCCCGA
TGACCACGCAGTGCGGAATGAGGCTTATCACAGGAAGATCATCTCTTGGTTTGGAGATTCCCCCGTGGCC
GTCTTTGGCTTACATCGTCTGATAGAGTTTGGGAAGAAGTCTGGGAAAAAAGCTGGCGATTGGTATGGAC
CAGCGGTGGTTGCTCACATTTTAAGAAAAGCAGTTGAAGAAGCAAGGCATCCGGATTTGCAAGGGCTAAC
TATTTATGTTGCCCAGGACTGTACAGTTTACAATTCTGACGTGATTGATAAGCAGACTGACTCCGTGACA
GCTGGAGATGCACGTGACAAGGCTGTCATTATTTTAGTTCCTGTTAGACTCGGTGGAGAAAGGACCAATA
CCGACTATCTGGAGTTTGTGAAGGGTGTTTTAAGCCTTGAATACTGTGTAGGTATCATTGGCGGCAAACC
TAAACAGTCATATTACTTTGCTGGATTTCAAGATGACAGTTTGATTTACATGGATCCTCATTACTGCCAG
TCTTTTGTAGATGTCAGCATAAAGGATTTCCCTCTCGAGACATTCCACTGTCCATCTCCTAAAAAGATGT
CATTTCGAAAAATGGATCCTAGTTGTACGATAGGATTTTACTGTCGAAATGTCCAGGACTTTGAACGAGC
GTCTGAAGAAATCACTAAGATGTTGAAAATTTCCTCTAAGGAGAAATATCCACTATTTACTTTTGTAAAT
GGCCATTCCAAAGACTTTGATTTTACATCTACCGCAGCCAGTGAAGAAGACCTTTTCTCAGAAGATGAAA
GGAAGAATTTCAAAAGATTTAGCACAGAAGAGTTTGTCCTCCTTTAA

Translation (458 aa):
MEASGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDESKMLPARSGCAIEDH
VIAGNVEEFRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALH
IENADSDSWTSNTVKKFTASFEASLSGDRELRTPAVSLKETSGKCPDDHAVRNEAYHRKIISWFGDSPVA
VFGLHRLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGLTIYVAQDCTVYNSDVIDKQTDSVT
AGDARDKAVIILVPVRLGGERTNTDYLEFVKGVLSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQ
SFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEITKMLKISSKEKYPLFTFVN
GHSKDFDFTSTAASEEDLFSEDERKNFKRFSTEEFVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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