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Report for CCDS48477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48477.1 Public Mus musculus 1 Capn8 23 108 98 CCDS HistoryNCBI Gene:170725Re-query CCDS DB by CCDS ID:48477.1Re-query CCDS DB by GeneID:170725See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168514.6 ENSMUSP00000129549.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168514.6Link to Ensembl Protein Viewer:ENSMUSP00000129549.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168514Re-query CCDS DB by Protein ID:ENSMUSP00000129549
Original member Current member NCBI NM_001145806.1 NP_001139278.1 Accepted alive Link to Nucleotide Sequence:NM_001145806.1Link to Protein Sequence:NP_001139278.1Re-query CCDS DB by Nucleotide ID:NM_001145806Re-query CCDS DB by Protein ID:NP_001139278Link to BLAST:NP_001139278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139278.1 381 Q91VA3-2 381 100% 0 0

Chromosomal Locations for CCDS 48477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182565061 182565297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182571933 182572002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182596947 182597065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182597575 182597708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182598662 182598830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182599542 182599625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182602029 182602114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182603647 182603721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182604440 182604600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182605233 182605243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCAGCCCTGGCAGCTGGAATATCCAAGCAACGTGCAGCTGCTCAGGGCCTTGGCTCTAACCAGAATG
CTGTGAAGTATCTGGGCCAGGACTTCGAGACCCTGAGAAAGCAATGCTTGAACTCAGGGGTCCTATTTAA
AGACCCGGAATTCCCGGCATGTCCGTCAGCTTTGGGCTACAGGGATCTTGGACCAGGCTCTGCAGAAACT
CAAGGCATCATATGGAAGCGACCCACGGAATTGTGTTCCAACCCTCAGTTTATCGTTGGTGGAGCCACAC
GCACAGACATCCGCCAGGGGGGTCTTGGAGACTGTTGGCTTCTGGCAGCCATTGCCTCCCTCACCTTGAA
TGAAAAGCTGCTTTATCGAGTGGTTCCTAGAGACCAGAGCTTCCAGAAGAACTATGCTGGCATTTTTCAT
TTCCAGTTCTGGCAGTATGGAGAGTGGGTGGAGGTGGTCATTGATGACCGGCTCCCCACCAAGAATGGAC
AGCTGCTCTTCCTACACTCCGAAGAAGGCAATGAGTTCTGGAGTGCTCTGCTGGAGAAAGCCTATGCCAA
GCTCAATGGTTCGTATGAGGCTCTTGCTGGAGGCTCCACAATTGAGGGGTTTGAGGATTTCACGGGTGGC
ATCTCTGAGTTTTATGACTTGAGGAAGCCTCCGGGCAATCTGTACTACACCATCCAGAAGGCCCTGCGCA
AAGGCTCTCTGCTGGGCTGCTCCATTGATGTCTCAAACGCAGCCGAAGCAGAAGCCACCACCAGGCAAAA
GCTGGTTAAGGGCCACGCATACTCTGTGACTGGAGTCGAAGAGGTGGATTTCCGTGGCCTCCCAGAGAAG
CTGATCAGGTTGAGGAACCCGTGGGGTGAAGTGGAGTGGACGGGAGCCTGGAGTGATAGTGCACCTGAGT
GGAATTACATAGATCCACAGAAGAAGGGAGAACTGGACAAGAGAGCAGAAGATGGGGAGTTCTGGATGTC
CTTTTCGGATTTCTTGAAGCAGTTCTCCCGACTAGAGATATGCAACCTGTCCCCAGACTCTCTGAGCAGT
GAGGAGATACACAAATGGAACCTGGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCT
GCCAGAACTACCCAGGCTCCTTCTAG

Translation (381 aa):
MAALAAGISKQRAAAQGLGSNQNAVKYLGQDFETLRKQCLNSGVLFKDPEFPACPSALGYRDLGPGSAET
QGIIWKRPTELCSNPQFIVGGATRTDIRQGGLGDCWLLAAIASLTLNEKLLYRVVPRDQSFQKNYAGIFH
FQFWQYGEWVEVVIDDRLPTKNGQLLFLHSEEGNEFWSALLEKAYAKLNGSYEALAGGSTIEGFEDFTGG
ISEFYDLRKPPGNLYYTIQKALRKGSLLGCSIDVSNAAEAEATTRQKLVKGHAYSVTGVEEVDFRGLPEK
LIRLRNPWGEVEWTGAWSDSAPEWNYIDPQKKGELDKRAEDGEFWMSFSDFLKQFSRLEICNLSPDSLSS
EEIHKWNLVLFNGRWTRGSTAGGCQNYPGSF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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