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Report for CCDS85118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85118.1 Public Mus musculus 6 Ttll3 23 108 98 CCDS HistoryNCBI Gene:101100Re-query CCDS DB by CCDS ID:85118.1Re-query CCDS DB by GeneID:101100See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204026.2 ENSMUSP00000145049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204026.2Link to Ensembl Protein Viewer:ENSMUSP00000145049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204026Re-query CCDS DB by Protein ID:ENSMUSP00000145049
Original member Current member NCBI NM_001142732.1 NP_001136204.1 Accepted alive Link to Nucleotide Sequence:NM_001142732.1Link to Protein Sequence:NP_001136204.1Re-query CCDS DB by Nucleotide ID:NM_001142732Re-query CCDS DB by Protein ID:NP_001136204Link to BLAST:NP_001136204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136204.1 287 A4Q9E5-2 287 100% 0 0

Chromosomal Locations for CCDS 85118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113393147 113393194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113394692 113394860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113394998 113395095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113397930 113398058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113398770 113399189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGGCCGACTCAGAAACGCCAAAATCCACGTAGAGAGAGCCGTCAAGCAGAAGAAGATCTTTATGATTC
ATGGCCGATACCCAGTGATCCGGTGTCTCTTGCGTCAGAGGGGCTGGGTAGAGAAGAAGATGGTGCATCC
CCCAGGCACAGCCCTGCCAGCACCCCAGAAGGATCTCGATAGCTCCATGCTGGGTGATAGCGATGCCACG
GAGGATGAGGATGAGGAAGAGAACGAAATGTTTCGGGAGTCGCAGCTGTTGGACTTGGATGGTTTCCTGG
AATTTGATGACCTAGATGGGATACATGCTTTGATGTCCCGCATGGTTCGAAATGAGACCCCCTACCTCAT
CTGGACCACTCGGCGGGATGTGCTGGATTGTCGCTTCCTTTCCAAGGATCAGATGATAAACCATTATGCC
CGTGCAGGCTCCTTCACCACAAAGGTGGGCCTTTGTCTCAACCTCCGGAATCTGCCGTGGTTTGATGAGG
CCGATGCTGACTCTTTCTTCCCACGATGCTACCGATTGGGGGCAGAGGATGACAAGAAAGCCTTCATAGG
TAAGGGGACTCCAATCCCAGGCCTGGCTCCCTCATGCTGTCTGTCCCACAGGGGAAAAGAGCAAGCCTCC
CCTTGTGGCCTCTGTAACCCCAGCCCTTTCCTCCTACCAATGGGTCTTCCATTCATAAGCCAACCTTGGC
ATTCAGAGAAGCCTAGGGAGCCAGGCTTGTACCCTGTAGCGGGTTCTAGAGGTGGGTGGGTTGGTTCTGT
CTGGAGTCTAGATAAGTTGCTGGCTGGACCAGGTTCTACAAAAGGCAATGGGTCTCTAAGGCAAAGTAAG
TTCCTGTTTCAACATGGGTTCTGA

Translation (287 aa):
MGRLRNAKIHVERAVKQKKIFMIHGRYPVIRCLLRQRGWVEKKMVHPPGTALPAPQKDLDSSMLGDSDAT
EDEDEEENEMFRESQLLDLDGFLEFDDLDGIHALMSRMVRNETPYLIWTTRRDVLDCRFLSKDQMINHYA
RAGSFTTKVGLCLNLRNLPWFDEADADSFFPRCYRLGAEDDKKAFIGKGTPIPGLAPSCCLSHRGKEQAS
PCGLCNPSPFLLPMGLPFISQPWHSEKPREPGLYPVAGSRGGWVGSVWSLDKLLAGPGSTKGNGSLRQSK
FLFQHGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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