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Report for CCDS45775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45775.1 Public Homo sapiens 17 CASKIN2 24 110 108 CCDS HistoryNCBI Gene:57513Re-query CCDS DB by CCDS ID:45775.1Re-query CCDS DB by GeneID:57513See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45775.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433559.6 ENSP00000406963.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433559.6Link to Ensembl Protein Viewer:ENSP00000406963.2Re-query CCDS DB by Nucleotide ID:ENST00000433559Re-query CCDS DB by Protein ID:ENSP00000406963
Original member Current member NCBI NM_001142643.3 NP_001136115.1 Accepted alive Link to Nucleotide Sequence:NM_001142643.3Link to Protein Sequence:NP_001136115.1Re-query CCDS DB by Nucleotide ID:NM_001142643Re-query CCDS DB by Protein ID:NP_001136115Link to BLAST:NP_001136115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136115.1 1120 Q8WXE0-2 1120 100% 0 0

Chromosomal Locations for CCDS 45775.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75501080 75501170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75501468 75501690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75501779 75503254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75503389 75503527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75503659 75503760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75503852 75503962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504215 75504306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504420 75504480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504572 75504693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75504812 75505073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75505557 75505651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75505821 75505929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506305 75506413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506583 75506713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506799 75506894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75506984 75507127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3363 nt):
ATGCGCCCGCTGCACTACGCAGCCTGGCAGGGCCGGCTGGAGCCTGTGAGGCTGCTGCTGCGCGCCTCTG
CGGCTGTCAATGCCGCCTCGCTGGACGGACAGATCCCCCTGCACCTGGCTGCACAGTATGGACATTATGA
GGTGTCAGAAATGCTCCTCCAGCATCAGTCCAACCCATGCCTGGTCAACAAGGCCAAGAAGACGCCCCTG
GACCTGGCCTGTGAATTTGGCCGACTCAAGGTGGCCCAGCTGCTTCTGAACAGCCACTTATGTGTGGCAC
TGCTGGAGGGTGAGGCCAAAGACCCGTGTGACCCCAACTACACCACGCCCCTGCACTTGGCTGCCAAGAA
TGGCCACAGAGAAGTCATCAGGCAGCTCCTGAGAGCTGGGATCGAGATCAACCGCCAGACCAAGACGGGT
ACGGCGCTCCACGAGGCCGCACTGTATGGCAAGACCGAGGTGGTGCGGCTGCTTCTGGAGGGAGGTGTGG
ACGTGAACATCCGGAATACGTATAACCAGACGGCGCTGGACATAGTGAATCAGTTCACCACCTCCCAGGC
CAGCCGGGAAATCAAGCAGCTACTGCGGGAGGCCTCAGGGATCCTGAAGGTCCGAGCGCTCAAGGATTTC
TGGAACCTCCACGATCCCACTGCTCTCAATGTCCGGGCAGGGGATGTCATCACGGTGCTAGAACAGCATC
CCGACGGCCGCTGGAAGGGCCACATCCACGAGAGCCAGAGGGGCACAGACCGCATAGGCTACTTCCCCCC
GGGCATTGTCGAGGTGGTCAGCAAGCGGGTGGGCATCCCTGCAGCCCGCCTCCCCTCCGCACCCACCCCC
CTGCGCCCAGGCTTCTCCCGGACACCGCAGCCTCCTGCCGAAGAACCCCCGCACCCTCTTACCTACAGCC
AGCTTCCTCGGGTGGGCCTCAGCCCAGACAGCCCAGCAGGTGACAGGAATAGTGTGGGCAGTGAGGGCAG
CGTGGGCAGCATCCGCAGTGCCGGCAGCGGGCAGAGCTCTGAGGGCACTAATGGCCATGGCCCTGGCCTC
CTGATTGAGAACGCCCAGCCACTGCCCTCTGCTGGAGAGGACCAGGTGCTGCCAGGACTCCACCCGCCGT
CCCTGGCAGACAACCTGAGCCACCGCCCTCTGGCCAACTGCCGCTCTGGGGAGCAGATCTTCACCCAGGA
CGTGCGGCCAGAACAGCTGCTGGAGGGGAAGGACGCGCAGGCCATTCATAACTGGCTAAGCGAGTTCCAG
CTGGAGGGCTACACTGCCCACTTTCTGCAGGCCGGCTATGATGTGCCTACCATCAGCCGCATGACACCTG
AGGACCTGACGGCCATCGGGGTGACCAAGCCTGGGCACAGGAAGAAGATCGCCTCAGAGATCGCTCAGCT
CAGCATCGCCGAGTGGCTGCCCAGCTACATCCCAACGGACCTGCTGGAGTGGCTGTGTGCACTGGGGCTG
CCACAGTACCACAAGCAGCTGGTGAGCAGCGGCTACGACTCCATGGGGCTGGTGGCCGACCTCACCTGGG
AGGAGCTGCAGGAGATTGGGGTCAACAAGCTCGGGCATCAGAAGAAGCTCATGCTGGGGGTGAAGCGGCT
GGCGGAGCTTCGGCGGGGCCTGCTGCAGGGGGAGGCCCTCAGCGAAGGCGGGCGCCGGCTGGCCAAGGGT
CCGGAGCTGATGGCCATCGAGGGACTGGAGAACGGAGAAGGCCCAGCTACAGCTGGCCCACGGCTCCTCA
CCTTCCAGGGCAGCGAACTAAGCCCAGAGCTACAGGCGGCCATGGCAGGGGGTGGCCCTGAACCACTCCC
CCTCCCACCTGCCCGCTCTCCCAGCCAGGAGAGCATCGGGGCACGCTCACGGGGGTCTGGCCACTCACAG
GAACAGCCTGCCCCACAGCCCAGCGGTGGAGATCCCAGCCCCCCCCAGGAGAGGAACCTCCCAGAGGGCA
CAGAGCGGCCCCCTAAGCTTTGTTCTTCACTTCCTGGCCAAGGACCCCCACCCTATGTTTTTATGTACCC
CCAGGGCTCACCCTCTAGCCCGGCCCCAGGGCCACCTCCTGGCGCACCCTGGGCCTTCTCCTACTTGGCC
GGGCCCCCTGCCACTCCCCCAGACCCGCCTCGACCTAAGCGCCGGTCCCACAGCCTAAGCCGCCCTGGCC
CCACAGAGGGGGATGCTGAGGGGGAGGCCGAAGGGCCAGTGGGCAGCACCCTAGGCAGTTATGCTACCCT
TACCCGGCGGCCAGGACGCAGTGCCCTTGTCCGGACCAGTCCTAGTGTGACCCCAACCCCAGCTCGGGGG
ACTCCTCGCAGCCAGTCCTTTGCCCTGCGGGCCCGGCGCAAAGGCCCCCCGCCCCCGCCCCCCAAGCGCC
TCAGCTCCGTCTCTGGCCCCAGCCCGGAGCCACCTCCACTAGATGAGAGCCCAGGGCCCAAGGAAGGGGC
CACAGGGCCCCGAAGGCGAACACTGAGTGAACCTGCTGGCCCCTCAGAGCCCCCTGGCCCACCTGCCCCG
GCTGGGCCCGCGTCAGACACGGAGGAGGAGGAGCCAGGCCCTGAGGGGACGCCCCCATCTCGGGGCAGCT
CTGGGGAAGGGCTGCCGTTTGCAGAGGAAGGGAACCTGACCATCAAACAGCGCCCGAAGCCCGCTGGCCC
CCCGCCCCGAGAGACACCCGTGCCCCCCGGCCTCGATTTCAACCTCACGGAATCAGACACTGTTAAGCGG
AGGCCCAAGTGCCGGGAGAGAGAGCCACTGCAGACCGCACTGCTGGCCTTCGGAGTGGCCAGTGCCACGC
CTGGCCCCGCTGCCCCACTGCCTTCCCCAACTCCTGGCGAGTCTCCTCCAGCTTCTAGCCTTCCCCAGCC
CGAGCCCAGCAGCCTTCCAGCCCAAGGAGTTCCAACCCCCCTTGCTCCCAGCCCCGCCATGCAGCCTCCA
GTGCCGCCCTGCCCAGGGCCAGGTCTGGAAAGCTCAGCAGCTAGTCGGTGGAATGGGGAGACAGAACCCC
CGGCCGCCCCTGCTGCCCTCCTCAAGGTGCCCGGAGCAGGAACAGCCCCCAAGCCTGTGTCGGTGGCCTG
CACCCAGCTGGCATTTTCTGGCCCTAAGCTAGCGCCCCGGCTCGGCCCCCGCCCAGTGCCTCCTCCACGG
CCTGAGAGCACTGGGACTGTGGGCCCAGGCCAGGCCCAGCAGAGACTGGAGCAGACCAGCTCGTCCCTGG
CAGCTGCACTGAGAGCCGCAGAGAAGAGCATTGGCACCAAGGAGCAAGAGGGCACCCCCAGCGCCTCCAC
CAAGCACATTCTGGATGACATCAGCACCATGTTCGACGCCCTGGCTGACCAGCTGGACGCCATGCTGGAC
TGA

Translation (1120 aa):
MRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKAKKTPL
DLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLRAGIEINRQTKTG
TALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRALKDF
WNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSKRVGIPAARLPSAPTP
LRPGFSRTPQPPAEEPPHPLTYSQLPRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQSSEGTNGHGPGL
LIENAQPLPSAGEDQVLPGLHPPSLADNLSHRPLANCRSGEQIFTQDVRPEQLLEGKDAQAIHNWLSEFQ
LEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPSYIPTDLLEWLCALGL
PQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVKRLAELRRGLLQGEALSEGGRRLAKG
PELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPARSPSQESIGARSRGSGHSQ
EQPAPQPSGGDPSPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLA
GPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARG
TPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAP
AGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKR
RPKCREREPLQTALLAFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPP
VPPCPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPPR
PESTGTVGPGQAQQRLEQTSSSLAAALRAAEKSIGTKEQEGTPSASTKHILDDISTMFDALADQLDAMLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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