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Report for CCDS44476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44476.1 Public Homo sapiens 10 CALHM3 24 110 108 CCDS HistoryNCBI Gene:119395Re-query CCDS DB by CCDS ID:44476.1Re-query CCDS DB by GeneID:119395See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369783.4 ENSP00000358798.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369783.4Link to Ensembl Protein Viewer:ENSP00000358798.4Re-query CCDS DB by Nucleotide ID:ENST00000369783Re-query CCDS DB by Protein ID:ENSP00000358798
Original member Current member NCBI NM_001129742.2 NP_001123214.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001129742.2Link to Protein Sequence:NP_001123214.1Re-query CCDS DB by Nucleotide ID:NM_001129742Re-query CCDS DB by Protein ID:NP_001123214Link to BLAST:NP_001123214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123214.1 344 Q86XJ0 344 100% 0 0

Chromosomal Locations for CCDS 44476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103473213 103473704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103476294 103476549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103478746 103479032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGATAAATTCCGCATGCTCTTCCAGCACTTCCAGTCAAGCTCGGAGTCGGTGATGAATGGCATCTGCC
TGCTGCTGGCTGCGGTCACCGTCAAGCTGTACTCCTCCTTTGACTTCAACTGTCCCTGCCTGGTGCACTA
CAATGCACTCTACGGCCTGGGCCTGCTGCTGACGCCCCCGCTCGCCCTGTTTCTCTGCGGCCTCCTCGCC
AACCGGCAGTCTGTGGTGATGGTCGAGGAGTGGCGCCGGCCCGCAGGGCACCGGAGGAAGGACCCAGGCA
TCATCAGGTACATGTGCTCCTCTGTGCTGCAGAGGGCGCTGGCCGCCCCCCTGGTCTGGATCCTGCTGGC
CCTCCTTGACGGGAAGTGCTTCGTGTGTGCCTTCAGCAGCTCTGTGGACCCTGAGAAGTTTCTGGACTTT
GCCAACATGACCCCCAGCCAGGTACAGCTCTTCCTGGCCAAGGTTCCCTGCAAGGAGGATGAGCTGGTCA
GGGATAGCCCTGCTCGGAAGGCAGTGTCTCGCTACCTGCGGTGCCTGTCACAGGCCATCGGCTGGAGCGT
CACCCTGCTGCTGATCATCGCGGCCTTCCTGGCCCGCTGCCTGAGGCCCTGCTTCGACCAGACAGTCTTC
CTGCAGCGCAGATACTGGAGCAACTACGTGGACCTGGAGCAGAAGCTCTTCGACGAGACCTGCTGTGAGC
ATGCGCGGGACTTCGCGCACCGCTGCGTGCTGCACTTCTTTGCCAGCATGCGGAGTGAGCTGCAGGCGCG
GGGGCTGCGCCGGGGCAATGCAGGCAGGAGACTCGAGCTCCCCGCAGTGCCTGAGCCCCCAGAAGGCCTG
GATAGTGGAAGTGGGAAGGCCCACCTGCGCGCAATCTCCAGCCGGGAGCAGGTGGACCGCCTCCTAAGCA
CGTGGTACTCCAGCAAGCCGCCGCTGGACCTGGCTGCATCCCCCGGGCTCTGCGGGGGTGGCCTTAGCCA
CCGCGCCCCTACCTTGGCACTGGGCACGAGGCTGTCACAACACACCGACGTGTAG

Translation (344 aa):
MDKFRMLFQHFQSSSESVMNGICLLLAAVTVKLYSSFDFNCPCLVHYNALYGLGLLLTPPLALFLCGLLA
NRQSVVMVEEWRRPAGHRRKDPGIIRYMCSSVLQRALAAPLVWILLALLDGKCFVCAFSSSVDPEKFLDF
ANMTPSQVQLFLAKVPCKEDELVRDSPARKAVSRYLRCLSQAIGWSVTLLLIIAAFLARCLRPCFDQTVF
LQRRYWSNYVDLEQKLFDETCCEHARDFAHRCVLHFFASMRSELQARGLRRGNAGRRLELPAVPEPPEGL
DSGSGKAHLRAISSREQVDRLLSTWYSSKPPLDLAASPGLCGGGLSHRAPTLALGTRLSQHTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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