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Report for CCDS15490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15490.1 Public Mus musculus 1 Dedd 23 108 98 CCDS HistoryNCBI Gene:21945Re-query CCDS DB by CCDS ID:15490.1Re-query CCDS DB by GeneID:21945See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064950.10 ENSMUSP00000068419.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064950.10Link to Ensembl Protein Viewer:ENSMUSP00000068419.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000064950Re-query CCDS DB by Protein ID:ENSMUSP00000068419
Original member Current member EBI ENSMUST00000097467.7 ENSMUSP00000095075.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097467.7Link to Ensembl Protein Viewer:ENSMUSP00000095075.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097467Re-query CCDS DB by Protein ID:ENSMUSP00000095075
Original member Current member EBI ENSMUST00000111299.7 ENSMUSP00000106930.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111299.7Link to Ensembl Protein Viewer:ENSMUSP00000106930.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111299Re-query CCDS DB by Protein ID:ENSMUSP00000106930
Original member Current member EBI ENSMUST00000111300.7 ENSMUSP00000106931.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111300.7Link to Ensembl Protein Viewer:ENSMUSP00000106931.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111300Re-query CCDS DB by Protein ID:ENSMUSP00000106931
Original member NCBI NM_001128609.1 NP_001122081.1 Updated not alive Link to Nucleotide Sequence:NM_001128609.1Link to Protein Sequence:NP_001122081.1Re-query CCDS DB by Nucleotide ID:NM_001128609Re-query CCDS DB by Protein ID:NP_001122081
Current member NCBI NM_001128609.2 NP_001122081.1 Accepted alive Link to Nucleotide Sequence:NM_001128609.2Link to Protein Sequence:NP_001122081.1Re-query CCDS DB by Nucleotide ID:NM_001128609Re-query CCDS DB by Protein ID:NP_001122081Link to BLAST:NP_001122081.1
Original member NCBI NM_001357550.1 NP_001344479.1 Updated not alive Link to Nucleotide Sequence:NM_001357550.1Link to Protein Sequence:NP_001344479.1Re-query CCDS DB by Nucleotide ID:NM_001357550Re-query CCDS DB by Protein ID:NP_001344479
Current member NCBI NM_001357550.2 NP_001344479.1 Accepted alive Link to Nucleotide Sequence:NM_001357550.2Link to Protein Sequence:NP_001344479.1Re-query CCDS DB by Nucleotide ID:NM_001357550Re-query CCDS DB by Protein ID:NP_001344479Link to BLAST:NP_001344479.1
Original member NCBI NM_001357551.1 NP_001344480.1 Updated not alive Link to Nucleotide Sequence:NM_001357551.1Link to Protein Sequence:NP_001344480.1Re-query CCDS DB by Nucleotide ID:NM_001357551Re-query CCDS DB by Protein ID:NP_001344480
Current member NCBI NM_001357551.2 NP_001344480.1 Accepted alive Link to Nucleotide Sequence:NM_001357551.2Link to Protein Sequence:NP_001344480.1Re-query CCDS DB by Nucleotide ID:NM_001357551Re-query CCDS DB by Protein ID:NP_001344480Link to BLAST:NP_001344480.1
Original member NCBI NM_001357552.1 NP_001344481.1 Updated not alive Link to Nucleotide Sequence:NM_001357552.1Link to Protein Sequence:NP_001344481.1Re-query CCDS DB by Nucleotide ID:NM_001357552Re-query CCDS DB by Protein ID:NP_001344481
Current member NCBI NM_001357552.2 NP_001344481.1 Accepted alive Link to Nucleotide Sequence:NM_001357552.2Link to Protein Sequence:NP_001344481.1Re-query CCDS DB by Nucleotide ID:NM_001357552Re-query CCDS DB by Protein ID:NP_001344481Link to BLAST:NP_001344481.1
Original member NCBI NM_001357553.1 NP_001344482.1 Updated not alive Link to Nucleotide Sequence:NM_001357553.1Link to Protein Sequence:NP_001344482.1Re-query CCDS DB by Nucleotide ID:NM_001357553Re-query CCDS DB by Protein ID:NP_001344482
Current member NCBI NM_001357553.2 NP_001344482.1 Accepted alive Link to Nucleotide Sequence:NM_001357553.2Link to Protein Sequence:NP_001344482.1Re-query CCDS DB by Nucleotide ID:NM_001357553Re-query CCDS DB by Protein ID:NP_001344482Link to BLAST:NP_001344482.1
Original member NCBI NM_011615.3 NP_035745.3 Updated not alive Link to Nucleotide Sequence:NM_011615.3Link to Protein Sequence:NP_035745.3Re-query CCDS DB by Nucleotide ID:NM_011615Re-query CCDS DB by Protein ID:NP_035745
Current member NCBI NM_011615.4 NP_035745.3 Accepted alive Link to Nucleotide Sequence:NM_011615.4Link to Protein Sequence:NP_035745.3Re-query CCDS DB by Nucleotide ID:NM_011615Re-query CCDS DB by Protein ID:NP_035745Link to BLAST:NP_035745.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122081.1 318 Q9Z1L3 318 100% 0 0
NP_001344479.1 318 Q9Z1L3 318 100% 0 0
NP_001344480.1 318 Q9Z1L3 318 100% 0 0
NP_001344481.1 318 Q9Z1L3 318 100% 0 0
NP_001344482.1 318 Q9Z1L3 318 100% 0 0
NP_035745.3 318 Q9Z1L3 318 100% 0 0

Chromosomal Locations for CCDS 15490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171338316 171338640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171338823 171338930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171340193 171340339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171340828 171341204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCGGGCCTAAAGAGGCGGGCAAGCCAGGTGTGGCCCGAAGAGCGTGGGGAGCAAGAACATGGGCTCT
ACAGCCTCCACCGCATGTTCGACATCGTGGGCACCCACCTAACACACAGAGATGTCCGAGTGCTTTCCTT
CCTTTTTGTTGATGTTATTGATGACCATGAACGTGGACTCATCCGAAATGGACGTGACTTCTTATTGGCA
CTGGAGCGCCAGGGCCGCTGTGACGAGAGTAACTTTCGCCAGGTGCTGCAGCTGCTGCGCATCATCACTC
GCCATGACTTGCTGCCCTACGTTACTCTCAAGAAGAGACGAGCTGTGTGCCCTGATCTTGTAGACAAGTA
TCTGGAGGAAACATCAATTCGCTATGTGACCCCCAGAGCCCTCAGTGACCCAGAACCGAGGCCTCCCCAG
CCCTCTAAAACAGTGCCTCCCCACTATCCTGTGGTGTGCTGCCCCACTTCGGGTTCTCAAATGTGTAGTA
AGCGGCCAGCCCGAGGGAGAACCACACTTGGGAGCCAGCGAAAACGCCGGAAGTCGGTGACACCAGACCC
GAAGGAAAAGCAGACATGTGATATCAGGCTCCGAGTTCGGGCGGAATACTGCCAGCATGAGACGGCTCTG
CAAGGCAATGTCTTCTCCAATAAGCAGGACCCACTTGAGCGCCAGTTTGAGCGCTTTAACCAGGCCAACA
CTATCCTCAAGTCCCGGGACCTGGGCTCCATCATCTGTGACATCAAGTTCTCTGAGCTCACCTACCTCGA
CGCATTCTGGCGAGACTACATTAATGGCTCATTATTAGAGGCACTGAAAGGTGTCTTCATCACAGACTCT
CTCAAGCAAGCTGTGGGCCATGAAGCCATCAAGCTGCTGGTGAACGTGGATGAGGAGGACTATGAGCTGG
GCCGACAGAAACTCCTGAGGAACTTGATGCTGCAGGCATTACCCTGA

Translation (318 aa):
MAGLKRRASQVWPEERGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGLIRNGRDFLLA
LERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKKRRAVCPDLVDKYLEETSIRYVTPRALSDPEPRPPQ
PSKTVPPHYPVVCCPTSGSQMCSKRPARGRTTLGSQRKRRKSVTPDPKEKQTCDIRLRVRAEYCQHETAL
QGNVFSNKQDPLERQFERFNQANTILKSRDLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDS
LKQAVGHEAIKLLVNVDEEDYELGRQKLLRNLMLQALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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