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Report for CCDS38785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38785.1 Public Mus musculus 4 Msantd5f1 23 108 98 CCDS HistoryNCBI Gene:242502Re-query CCDS DB by CCDS ID:38785.1Re-query CCDS DB by GeneID:242502See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084475.3 ENSMUSP00000081515.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084475.3Link to Ensembl Protein Viewer:ENSMUSP00000081515.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084475Re-query CCDS DB by Protein ID:ENSMUSP00000081515
Original member Current member NCBI NM_001081644.1 NP_001075113.1 Accepted alive Link to Nucleotide Sequence:NM_001081644.1Link to Protein Sequence:NP_001075113.1Re-query CCDS DB by Nucleotide ID:NM_001081644Re-query CCDS DB by Protein ID:NP_001075113Link to BLAST:NP_001075113.1

Chromosomal Locations for CCDS 38785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 73683633 73683638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73684333 73684420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73684888 73685196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73685475 73685552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73686532 73686837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73687141 73687436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGCAGAGAGAAGATAACCGAGTCCAAAGTGTGAGAAATGACAAAGAAGCCAATAGGAGGAGGAGGCTGA
GGCAAGAAGGCCAAAGTTCCTCAGGTCCGTGTGATAGCCCGTGGACTGAGGATGAAATCTGGATCTTGCT
GCAAGAGTGGGCAATGGTTGAATATGAACTCGGAGACCCAGGCAATAAGATGCATGCGAAGGCCAAGTCC
CTTAGCAGACGCCTCTCTAATCGGGGTCTGAGGAAGAGCAAGAATAGCTGCCTTGATGTGATGGTGAAGA
TGAAGGACCTGCACACACGTCTTTGTAACGAGAGGCCCCGGGCTTACCGCTTGTATTCGACTTATGAATG
GATCCTGTACGAGATCTTGGGCCACCCCAGATCCCAGGGAGGCTATGTGCCAGGTCCTTGGTTTGATGGG
CACGGTAACCCACCAGCTTCCTATGCAACTTCCCTCTGCATTGGTGGTGCCATCTCTCTAGGCCCTTCCT
TTAGCCCATGGACCGACCCTGAAATCAAGATCTTCCTGCAGGAGTGGCAAGTGGTTGAACGGGAATTTGG
CCACCCAGGCCAGAAGATCAAGCAGAAGAGCAGTCTTGTTTGCCAGCGTCTCTATCATCGAGGCCTGTTC
AAGGACATCCAAAGCTGTTTGGACCTGATGTGGACCATGAAGGATCTGCACTCCACTCTCAGTAGAGAGA
GATCAAGGACTGTACCCTTGTTTTCTCCTTATAGAGATTATCTGGAAAGGATCTTCGACCCCAAATGTCA
GAGAGGCCATGTTCCAGGTGTTCAGTATAATTGGTCTGGTTACCACAGGCCTTCCTCAAACCCTCAAACT
CCAATGGTGATGCCATCTCCTGTATACCAGCCTTGGGATTATGGCATGGCTGCATCTTCTGGTCAGCTTC
CCTGGATCCCATTACTAATCATGTCCAGTCAGGACTTACTGGTTCCCAGATGGGATGCCTGGAATGCCAC
CTATCCATTGCCAGTTCAACATGTATTTCAGGCCTCTCTCCCTGGAGACAACAACTTTCAGCAGCTGTGG
TCACCTCGTGATGAGAGCTCAAGTCCTCAGTGA

Translation (360 aa):
MQREDNRVQSVRNDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKS
LSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGPWFDG
HGNPPASYATSLCIGGAISLGPSFSPWTDPEIKIFLQEWQVVEREFGHPGQKIKQKSSLVCQRLYHRGLF
KDIQSCLDLMWTMKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGVQYNWSGYHRPSSNPQT
PMVMPSPVYQPWDYGMAASSGQLPWIPLLIMSSQDLLVPRWDAWNATYPLPVQHVFQASLPGDNNFQQLW
SPRDESSSPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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