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Report for CCDS38753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38753.1 Public Mus musculus 4 Frmpd1 23 108 98 CCDS HistoryNCBI Gene:666060Re-query CCDS DB by CCDS ID:38753.1Re-query CCDS DB by GeneID:666060See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044773.11 ENSMUSP00000047232.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044773.11Link to Ensembl Protein Viewer:ENSMUSP00000047232.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044773Re-query CCDS DB by Protein ID:ENSMUSP00000047232
Original member Current member EBI ENSMUST00000107804.1 ENSMUSP00000103434.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107804.1Link to Ensembl Protein Viewer:ENSMUSP00000103434.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107804Re-query CCDS DB by Protein ID:ENSMUSP00000103434
Original member NCBI NM_001081172.2 NP_001074641.1 Updated not alive Link to Nucleotide Sequence:NM_001081172.2Link to Protein Sequence:NP_001074641.1Re-query CCDS DB by Nucleotide ID:NM_001081172Re-query CCDS DB by Protein ID:NP_001074641
Current member NCBI NM_001081172.3 NP_001074641.1 Accepted alive Link to Nucleotide Sequence:NM_001081172.3Link to Protein Sequence:NP_001074641.1Re-query CCDS DB by Nucleotide ID:NM_001081172Re-query CCDS DB by Protein ID:NP_001074641Link to BLAST:NP_001074641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074641.1 1549 A2AKB4 1549 100% 0 0

Chromosomal Locations for CCDS 38753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45229835 45229935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45243630 45243787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45244572 45244674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45249174 45249219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45256842 45256949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45261833 45261928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45268469 45268594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45269900 45270019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45271130 45271266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45273078 45273204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45273359 45273454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45274312 45274494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45275250 45275397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45278826 45279641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45283546 45285830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4650 nt):
ATGGAAGAGCTGGACGGCAGCTTATCCCAGACTCGGAAAGCACACAGAATAGAACAGATGGTGGCAAGGT
GGCTTCGGCGCTCCAGGGACAGCTCAGCCCGAGCTAAAGTCGCTGCAGCTGATGGGCCACCCGGGAACCC
AGCCCAGGCACTCACGCCAGTGAGGCACACAGTAACACTAGACAAAGATGTCCTCCTCCAGAACTATGGA
TTCCACATTTCTGAGACTCTTCCCCTCACAGTGGTGGCTGTCACAGCAGGCGGCTCTGCTCACGGCAAGC
TTTTCCCTGGTGATCAGATTCTCCAAATGAACAATGAACTGGCTGAAGACCTTTCCTGTGAACGAGCGGC
TGATATTCTCAGGGAAACTGAAGATGCTCTTTCAATTACAGTTGTCCGCTGCACATCGGGAGTCCCCAAG
TCATCCTTCTTGACTGAGGAGAAGCGGGCCCGGCTGAAGAGCAACCCCGTGAAGGTGCACTTTGCTGAGG
AAGTACTGGTCAGTGGGCACAGTCAGGGGAACTCTCTGCTTTGTATGCCCAACGTGCTCAAGGTGTACCT
GGAGAACGGACAGACCAAAGCTTTCAAGTTTGAGGCAAACACAACTGTGAAGGACATCATCCTCACGGTG
AAGGAGAAGCTGTCCATCCGAAGCATCGAGTACTTTGCGCTGGCCCTTGAGGAACAGTACAGCATCTCCC
GCCTACACCTTCTGCATGAGGAAGAGCTGGTCCAGCAGGTGGTAGAAAGGGAAGAATCCCAGGACTCCCG
CTGCCTCTTCAGGGTGAGCTTTGTGCCCAAGGACCCCCTGGACCTGCTGAAAGAAGACCCTGTGGCATTT
GAATATCTCTACCTTCAGAGCTGCAGTGATGTACTCCAGGAGCGCTTTGCTGTGGAGATGAAGTGCAACT
CTGCCCTCCGGCTTGCAGCCCTGCACATCCAGGAGCGGATCTATGCCTGTGCCCAGCCACAGAAGATCTC
TTTGAAGTACATAGAGAAAGACTGGGGAATAGAGAATTTTATATCTCCAACTTTACTCCGAAATATGAAA
GGCAAAGACATCAAGAAAGCCATTAGCTTCCACATGAAAAGAAACCAGAATCTGCTAGAACCCCGGCAGA
AGCAACTTATTTCTGCTGCTCAGCTACGCTTAAATTATCTTCAGATCCTTGGGGAACTCAAGACGTATGG
TGGGAAAGTCTTCAATGCCACTTTGATGTTACAGGATAGAGAATCTTACATTGCCCTCCTGGTTGGGGCC
AAGTACGGGATTAGCCAGATCATCAACAGCAAGCTCAACATCATATCCACGCTGGCAGAGTTCGCCAACA
TCAGCCGCGTGGAGCTGACAGAAGAGTCTGAGAAAGTGAGCATGGTCAAGGTCTACCTTCAGGACGTTAA
GGTTCTGACTTTGTTGCTGGAATCCAGCAGTGCAAAAGACCTGGCCTGCTTGATCGCTGGGTACTACAGG
CTGTTTGTGGACCCGGCCAACTCCGTCTTCCACTGGTCTGGAAACAGACGGCCGACGCACCGGGTATCCG
CTGAAGAAGGCTACGAGTCCAGGGCCTGCAGTGACTCGGAGGAGTCCTCTGAAGTGGACTGTGTACTGGA
GCCCCTTTCTGACCGATGCCTGGTGAAGCTGAGCCTCTGCAGACCATTTGCTAGAGAGGAGCAGCCCCCT
GGCGACAGCCCCACACCTGAGGCAACCAGAAGAGGTCCAAGCACCTGCGGGGCCAGCAGCATGACAGACA
GTGCTGAATCGGAGGCATCGGACTCAGCCAACACAGAGAGCCGAGGCTGCAGGACCAGCGGGTCCAGTGA
GTCCATGGACGCCCTGGAAGAGGACGACTTAGATGCGTGCTCCTCCAGCGGGACCAGCTTCTTCCACTTT
GGCCCACCAGGCTTCTCAAAGGGCCTCGAGACCAACAGCCAAGAGGAAAACAGCAGGGTCGAGACCAGTG
GCTTCCTGTGTTTGCTGGACCTGGGCCAGAATGCCAACCCTCAGTGCCAGAAGATAGACGGTCCCCAGGG
CCTTGCTTCGGAGGCCTGCAGCTGGGGACCAGAACTGAGCATGGGCAGGCTAGACCCCAGGCTGTATGAG
GGCAGCCGGACTGACTACTATAACCTGTGTTCCAGCATCTCCCCAGGCAGCCACCTGAGTGACTCGGGCT
CAGAGAGCACAGCTTCCCGGCAGGGAGCTGCACCTCCCCAGTGGTGCCAGCAGGGCTGGATGGAGGCTCA
GTCTGGCTCCATGCTGGAATCCCTGGGCCTGCCCGCACTGCCCCCGCTGGCCTTTGAGGGTGGCAGCTCA
GATGAGGAATACTATGATGCAGCTGACAAACTCACGCCACCAGACACACTCTCAGGGCCCAGAGCTGCCG
ATCCTAGTGCCATGAGATTGCAGAGTCAGTCTAGAACCCGTGGCTCTGAGGAAAGCCTGCATCCGGGCCC
AGAGGGAGGAGAGCCAAGCAGGCAGGGAGGGGTGAAGAAGTATGCCAAGTCCCTGAGGAAAAGAAGGTCC
TTCCTACAGACGGATCACACCTCCCAGGTCTCCTTCCCCCTAGAGGCATCCGCCTCCCAAGAGAACACGG
ATGATGTGTGCTACTATGACCGAGAGCCCTACCTGACCCTCACTGCCCCCTCCCCAACTGTGTCCTCCCT
GCAGGACATGCAAGGTGAGCCAGGCCTCCTGGAGACCAAGGCCTTGGGGTTGCTGGCTTCCTTGAGGGAG
ACCAAGAGCACAAATCCAGCCTCCAGGATCATGGAGATGGAGCCAGAGACCATGGAAACCAAGTCAGTCA
TTGATTCCCGAGTGTCTTCTATCTCTGCCATTCGCCTCCGAATTGACCCCAGCAACACAGAGAATCCTGT
CACCACAGATGGCTCCTCAGCCAGCATCCCTCACAGCCCCCATCACTCCAACCCAGGTTCTTCCAGCCCA
CAGGCTGCTCAAGTCAGGCCTTTTCCAATCGTATCTCCAGATCAAGACCCAGGTGGCACCACCCCCAAAG
AACTCACTGCAGAGCCTGAGGACAGCACCTTCCCTCTCTCTAGTGATCACCCTAATCCAGATAACCCAGG
GCCACACCACGTCTCTCAAGGAGACACATCAGAGCTGGGAGAGGTGCGGTCAGAAATAGGCTCGGAATCT
TTTTTAATAAATCACGTACAAGAGGTTATCCCCCAAATCACAGGGCCCTTGTGTCCTGGAGATGGGCCTA
CCAGCGGTGAATGTGAAGTGAATTCGGAAGAGACGGCCTTGGCTGCAGATGAGGTACAAGGACAGCTGTC
CTTGGACAGTGACAGGGAAGTTATGCACAGAAATGGCCCTAGCCTATTCCAGAAGGGATCTGGGAAGGAC
CTGGGTGATTCCAAGGGTGACAGGTTAGATAATGTCCCACAAGCCCTTGACGTTAGAGCTCCAGCTGGTG
AAATAAACAGCTCCCTCTGCTCAGAGCCTCCTGCAACAGGGACAGGACAGACCTCATCTGACTCTGAAGG
GGAAAACAGAGAGGCCCAGGAACAGGAGTTGTTGACAGAGCTGGACTTGGCCCCTGATTTCTTACTTCCA
TCAGCCTTCCCGCCAGAGACAATAAAGGCAGAGCAGCTTGACCGCGTGATCGGGGAAGACTCCGTCCCCG
TGAGCACTTCTCAGCAGGTCTGTGTCCATACAGTACCATCCCTGCCAAAGCTTTCACCGTGTCAAGAAGA
GCCTCGCTCGGCAGATTCAGGCCATGGCTCACCAGCAGAGAGCAAAGGTGACGACAGTCCTATCATTTGC
CTACCGCCTGAGAGGTCGTTCCTGTGCTTTGCCCCAGAGAGCCATCCCGAAGGCTCCACCAGTCTCAGCA
GGGTCACCTCCTTCAGTTTTGCTGGCATAAACGAAGTGGCGCCCGCGGAGATTGGCATAGAACACTGCAG
ATGTCAGTTTTCCTATGCCACATGCTTCCGGGGCCTGCAGCCTGAGACAGAGGAAGAAGACGGGGACCCT
CAGACACACCCTGCTGCCCCTCTTACCTCCCCACCCTCTGCAGGAAGCCAAGTGACCCTGCCCTGGAGGG
CAGCCCGTGCCTACAGCTGCACCACACCCCTATCCAGGAAAAGCCACATCTGGCCAGAGTTCTGCTCCAG
GGCTCTGAGACAGCTGAAAACTACCCCCACAAATGCCCCCGAGGGCTTTGTCCAACTCACAGAGAGCCTG
CTGGAGCTACAGGACATCTTAGAAGCTTCCTGGGGGGTTGGAAACAAACACCCCCCTGACAAGTGCACCT
TGCATTTTTCAGAAAGCCGGAGCCGGCTATGCATGGGCTCACAGAAGCTCCTAGCCAGCTGTCAACACGT
GATCAGAATGGACCAATCCCCCGAGGAGATGCAAGGTGCTGTGCGGGTCACTTTCCAGCACCTGGTCCAG
CTGGCCGGCCTCTGCTTCCAGTTCACAGACTGTAGCCGCTGCTCCACCCGGCACAGGGAAGTGGCCGGGA
ACCTGAGGGACGTGGTATACACCTACCACCAATTTGTGGAGGCTGCGAAACTCACCTGTGAGAGAGGCTA
CCATGACTTCAGCGTGAAACTCTTGGCCCGCCAGTGCACGGCCCTCACAGCCGCTGTATTCTGTTTGACC
CAGAAGTTCCGGGCGTCCACCGCTCTGTGA

Translation (1549 aa):
MEELDGSLSQTRKAHRIEQMVARWLRRSRDSSARAKVAAADGPPGNPAQALTPVRHTVTLDKDVLLQNYG
FHISETLPLTVVAVTAGGSAHGKLFPGDQILQMNNELAEDLSCERAADILRETEDALSITVVRCTSGVPK
SSFLTEEKRARLKSNPVKVHFAEEVLVSGHSQGNSLLCMPNVLKVYLENGQTKAFKFEANTTVKDIILTV
KEKLSIRSIEYFALALEEQYSISRLHLLHEEELVQQVVEREESQDSRCLFRVSFVPKDPLDLLKEDPVAF
EYLYLQSCSDVLQERFAVEMKCNSALRLAALHIQERIYACAQPQKISLKYIEKDWGIENFISPTLLRNMK
GKDIKKAISFHMKRNQNLLEPRQKQLISAAQLRLNYLQILGELKTYGGKVFNATLMLQDRESYIALLVGA
KYGISQIINSKLNIISTLAEFANISRVELTEESEKVSMVKVYLQDVKVLTLLLESSSAKDLACLIAGYYR
LFVDPANSVFHWSGNRRPTHRVSAEEGYESRACSDSEESSEVDCVLEPLSDRCLVKLSLCRPFAREEQPP
GDSPTPEATRRGPSTCGASSMTDSAESEASDSANTESRGCRTSGSSESMDALEEDDLDACSSSGTSFFHF
GPPGFSKGLETNSQEENSRVETSGFLCLLDLGQNANPQCQKIDGPQGLASEACSWGPELSMGRLDPRLYE
GSRTDYYNLCSSISPGSHLSDSGSESTASRQGAAPPQWCQQGWMEAQSGSMLESLGLPALPPLAFEGGSS
DEEYYDAADKLTPPDTLSGPRAADPSAMRLQSQSRTRGSEESLHPGPEGGEPSRQGGVKKYAKSLRKRRS
FLQTDHTSQVSFPLEASASQENTDDVCYYDREPYLTLTAPSPTVSSLQDMQGEPGLLETKALGLLASLRE
TKSTNPASRIMEMEPETMETKSVIDSRVSSISAIRLRIDPSNTENPVTTDGSSASIPHSPHHSNPGSSSP
QAAQVRPFPIVSPDQDPGGTTPKELTAEPEDSTFPLSSDHPNPDNPGPHHVSQGDTSELGEVRSEIGSES
FLINHVQEVIPQITGPLCPGDGPTSGECEVNSEETALAADEVQGQLSLDSDREVMHRNGPSLFQKGSGKD
LGDSKGDRLDNVPQALDVRAPAGEINSSLCSEPPATGTGQTSSDSEGENREAQEQELLTELDLAPDFLLP
SAFPPETIKAEQLDRVIGEDSVPVSTSQQVCVHTVPSLPKLSPCQEEPRSADSGHGSPAESKGDDSPIIC
LPPERSFLCFAPESHPEGSTSLSRVTSFSFAGINEVAPAEIGIEHCRCQFSYATCFRGLQPETEEEDGDP
QTHPAAPLTSPPSAGSQVTLPWRAARAYSCTTPLSRKSHIWPEFCSRALRQLKTTPTNAPEGFVQLTESL
LELQDILEASWGVGNKHPPDKCTLHFSESRSRLCMGSQKLLASCQHVIRMDQSPEEMQGAVRVTFQHLVQ
LAGLCFQFTDCSRCSTRHREVAGNLRDVVYTYHQFVEAAKLTCERGYHDFSVKLLARQCTALTAAVFCLT
QKFRASTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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