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Report for CCDS46136.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46136.2 Public Homo sapiens 19 LMTK3 24 110 108 CCDS HistoryNCBI Gene:114783Re-query CCDS DB by CCDS ID:46136.2Re-query CCDS DB by GeneID:114783See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46136.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600059.6 ENSP00000472020.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000600059.6Link to Ensembl Protein Viewer:ENSP00000472020.1Re-query CCDS DB by Nucleotide ID:ENST00000600059Re-query CCDS DB by Protein ID:ENSP00000472020
Original member Current member EBI ENST00000673139.1 ENSP00000500153.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673139.1Link to Ensembl Protein Viewer:ENSP00000500153.1Re-query CCDS DB by Nucleotide ID:ENST00000673139Re-query CCDS DB by Protein ID:ENSP00000500153
Original member Current member NCBI NM_001080434.2 NP_001073903.2 Accepted alive Link to Nucleotide Sequence:NM_001080434.2Link to Protein Sequence:NP_001073903.2Re-query CCDS DB by Nucleotide ID:NM_001080434Re-query CCDS DB by Protein ID:NP_001073903Link to BLAST:NP_001073903.2
Original member Current member NCBI NM_001388485.1 NP_001375414.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388485.1Link to Protein Sequence:NP_001375414.1Re-query CCDS DB by Nucleotide ID:NM_001388485Re-query CCDS DB by Protein ID:NP_001375414Link to BLAST:NP_001375414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073903.2 1460 Q96Q04 1460 100% 0 0
NP_001375414.1 1460 Q96Q04 1460 100% 0 0

Chromosomal Locations for CCDS 46136.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48485773 48485789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48491108 48491245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48491404 48491539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48493694 48494109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48497393 48499917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48500996 48501145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48501283 48501404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48501478 48501562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48502433 48502581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48502909 48502996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48508851 48508969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48509437 48509513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48510023 48510173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48510459 48510592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48511501 48511576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4383 nt):
ATGCCTGCCCCCGGCGCCCTCATCCTCCTTGCGGCCGTCTCCGCCTCCGGCTGCCTGGCGTCCCCGGCCC
ACCCCGATGGATTCGCCCTGGGCCGGGCTCCTCTGGCTCCTCCCTACGCTGTGGTCCTCATTTCCTGCTC
CGGCCTGCTGGCCTTCATCTTCCTCCTCCTCACCTGTCTGTGCTGCAAACGGGGCGATGTCGGCTTCAAG
GAATTTGAGAACCCTGAAGGGGAGGACTGCTCCGGGGAGTACACTCCCCCTGCGGAGGAGACCTCCTCCT
CACAGTCGCTGCCTGATGTCTACATTCTCCCGCTGGCTGAGGTCTCCCTGCCAATGCCTGCCCCGCAGCC
TTCACACTCAGACATGACCACCCCCCTGGGCCTTAGCCGGCAGCACCTGAGCTACCTGCAGGAGATTGGG
AGTGGCTGGTTTGGGAAGGTGATCCTGGGAGAGATTTTCTCCGACTACACCCCCGCCCAGGTGGTGGTGA
AGGAGCTCCGAGCCAGCGCGGGGCCCCTGGAGCAACGCAAGTTCATCTCGGAAGCACAGCCGTACAGGAG
CCTGCAGCACCCCAATGTCCTCCAGTGCCTGGGTCTGTGCGTGGAGACGCTGCCGTTTCTGCTGATTATG
GAGTTCTGTCAACTGGGGGACCTGAAGCGTTACCTCCGAGCCCAGCGGCCCCCCGAGGGCCTGTCCCCTG
AGCTACCCCCTCGAGACCTGCGGACGCTGCAGAGGATGGGCCTGGAGATCGCCCGCGGGCTGGCGCACCT
GCATTCCCACAACTACGTGCACAGCGACCTGGCCCTGCGCAACTGCCTGCTGACCTCTGACCTGACCGTG
CGCATCGGAGACTACGGGCTGGCCCACAGCAACTACAAGGAGGACTACTACCTGACCCCAGAGCGCCTGT
GGATCCCACTGCGCTGGGCGGCGCCCGAGCTCCTCGGGGAGCTCCACGGGACCTTCATGGTGGTGGACCA
GAGCCGCGAGAGCAACATCTGGTCCCTGGGGGTGACCCTGTGGGAGCTGTTTGAGTTTGGGGCCCAGCCC
TACCGCCACCTGTCAGACGAGGAGGTCCTCGCCTTCGTGGTCCGCCAGCAGCATGTGAAGCTGGCCCGGC
CGAGGCTCAAGCTGCCTTACGCGGACTACTGGTATGACATTCTTCAGTCCTGCTGGCGGCCACCTGCCCA
GCGCCCTTCAGCCTCTGATCTCCAATTGCAGCTCACCTACTTGCTCTCCGAGCGGCCTCCCCGGCCCCCA
CCGCCGCCACCCCCACCCCGAGACGGTCCCTTCCCCTGGCCCTGGCCCCCTGCACACAGTGCGCCCCGCC
CGGGGACCCTCTCCTCACCGTTCCCCCTACTGGATGGCTTCCCTGGAGCCGACCCCGACGATGTGCTCAC
GGTCACCGAGAGTAGCCGCGGCCTCAACCTCGAGTGCCTGTGGGAGAAGGCCCGGCGTGGGGCCGGCCGG
GGTGGGGGGGCACCTGCCTGGCAGCCGGCGTCGGCCCCCCCGGCCCCCCACGCCAACCCCTCCAACCCTT
TCTACGAGGCGCTGTCCACGCCCAGCGTGCTGCCTGTCATCAGCGCCCGCAGCCCCTCCGTGAGCAGCGA
GTACTACATCCGCTTGGAGGAGCACGGCTCCCCTCCTGAGCCCCTCTTCCCCAACGACTGGGACCCCCTG
GACCCAGGAGTGCCCGCCCCTCAGGCCCCCCAGGCCCCCTCCGAGGTCCCCCAGCTGGTGTCCGAGACCT
GGGCCTCCCCCCTCTTCCCTGCGCCCCGGCCCTTCCCAGCCCAGTCCTCAGCGTCAGGCAGCTTCCTGCT
GAGCGGCTGGGACCCCGAGGGCCGGGGCGCCGGGGAGACCCTGGCGGGAGACCCTGCCGAGGTCTTGGGG
GAGCGGGGGACCGCCCCGTGGGTGGAAGAAGAAGAGGAGGAGGAGGAGGGCAGCTCCCCAGGGGAAGACA
GCAGCAGCCTTGGAGGTGGCCCAAGCCGCCGGGGTCCCCTACCCTGTCCCCTGTGCAGCCGCGAGGGGGC
CTGCTCCTGCCTGCCACTGGAGCGGGGGGACGCCGTAGCAGGCTGGGGAGGCCACCCTGCTCTTGGCTGC
CCCCACCCCCCCGAGGACGACTCCTCGCTGCGGGCAGAGCGGGGCTCCCTGGCCGACTTGCCCATGGCCC
CCCCCGCCTCGGCCCCCCCCGAGTTTCTGGACCCCCTCATGGGGGCGGCGGCGCCCCAGTACCCCGGGCG
GGGGCCACCTCCCGCTCCCCCCCCCCCGCCGCCACCTCCTCGGGCCCCCGCGGACCCGGCCGCGTCCCCC
GACCCCCCTTCGGCCGTGGCCAGTCCCGGTTCAGGCCTCTCGTCGCCGGGCCCCAAGCCGGGGGACAGCG
GCTACGAGACCGAGACCCCTTTTTCCCCAGAGGGAGCCTTCCCAGGTGGGGGGGCGGCCGAGGAGGAAGG
GGTCCCTCGGCCGCGGGCTCCCCCCGAGCCACCCGACCCAGGAGCGCCCCGGCCACCTCCAGACCCGGGT
CCGCTCCCACTCCCGGGGCCCCGGGAGAAGCCGACCTTCGTGGTTCAAGTGAGCACGGAACAGCTGCTGA
TGTCCCTGCGGGAGGATGTGACAAGGAACCTCCTGGGGGAGAAGGGGGCGACAGCCCGGGAGACAGGACC
CAGGAAGGCGGGGAGAGGCCCCGGGAACAGAGAGAAAGTCCCGGGCCTGAACAGGGACCCGACAGTCCTG
GGCAACGGGAAACAAGCCCCAAGCCTGAGCCTCCCAGTGAACGGGGTGACAGTGCTGGAGAACGGGGACC
AGAGAGCCCCAGGCATCGAGGAGAAGGCGGCGGAGAATGGGGCCCTGGGGTCCCCCGAGAGAGAAGAGAA
AGTGCTGGAGAATGGGGAGCTGACACCCCCAAGGAGGGAGGAGAAAGCGCTGGAGAATGGGGAGCTGAGG
TCCCCAGAGGCCGGGGAGAAGGTGCTGGTGAATGGGGGCCTGACACCCCCAAAGAGCGAGGACAAGGTGT
CAGAGAATGGGGGCCTGAGATTCCCCAGGAACACGGAGAGGCCACCAGAGACTGGGCCTTGGAGAGCCCC
AGGGCCCTGGGAGAAGACGCCCGAGAGTTGGGGTCCAGCCCCCACGATCGGGGAGCCAGCCCCAGAGACC
TCTCTGGAGAGAGCCCCTGCACCCAGCGCAGTGGTCTCCTCCCGGAACGGCGGGGAGACAGCCCCTGGCC
CCCTTGGCCCAGCCCCCAAGAACGGGACGCTGGAACCCGGGACCGAGAGGAGAGCCCCCGAGACTGGGGG
GGCGCCGAGAGCCCCAGGGGCTGGGAGGCTGGACCTCGGGAGTGGGGGCCGAGCCCCAGTGGGCACGGGG
ACGGCCCCCGGCGGCGGCCCCGGAAGCGGCGTGGACGCAAAGGCCGGATGGGTAGACAACACGAGGCCGC
AGCCACCGCCGCCACCGCTGCCACCGCCACCGGAGGCACAGCCGAGGAGGCTGGAGCCAGCGCCCCCGAG
AGCCAGGCCGGAGGTGGCCCCCGAGGGAGAGCCCGGGGCCCCAGACAGCAGGGCCGGCGGAGACACGGCA
CTCAGCGGAGACGGGGACCCCCCCAAGCCCGAGAGGAAGGGCCCCGAGATGCCACGACTATTCTTGGACT
TGGGACCCCCTCAGGGGAACAGCGAGCAGATCAAAGCCAGGCTCTCCCGGCTCTCGCTGGCGCTGCCGCC
GCTCACGCTCACGCCATTCCCGGGGCCGGGCCCGCGGCGGCCCCCGTGGGAGGGCGCGGACGCCGGGGCG
GCTGGCGGGGAGGCCGGCGGGGCGGGAGCGCCGGGGCCGGCGGAGGAGGACGGGGAGGACGAGGACGAGG
ACGAGGAGGAGGACGAGGAGGCGGCGGCGCCGGGCGCGGCGGCGGGGCCGCGGGGCCCCGGGAGGGCGCG
AGCAGCCCCGGTGCCCGTCGTGGTGAGCAGCGCCGACGCGGACGCGGCCCGCCCGCTGCGGGGGCTGCTC
AAGTCTCCGCGCGGGGCCGACGAGCCAGAGGACAGCGAGCTGGAGAGGAAGCGCAAGATGGTCTCCTTCC
ACGGGGACGTGACCGTCTACCTCTTCGACCAGGAGACGCCAACCAACGAGCTGAGCGTCCAGGCCCCCCC
CGAGGGGGACACGGACCCGTCAACGCCTCCAGCGCCCCCGACACCTCCCCACCCCGCCACCCCCGGAGAT
GGGTTTCCCAGCAACGACAGCGGCTTTGGAGGCAGTTTCGAGTGGGCGGAGGATTTCCCCCTCCTCCCCC
CTCCAGGCCCCCCGCTGTGCTTCTCCCGCTTCTCCGTCTCGCCTGCGCTGGAGACCCCGGGGCCACCCGC
CCGGGCCCCCGACGCCCGGCCCGCAGGCCCCGTGGAGAATTGA

Translation (1460 aa):
MPAPGALILLAAVSASGCLASPAHPDGFALGRAPLAPPYAVVLISCSGLLAFIFLLLTCLCCKRGDVGFK
EFENPEGEDCSGEYTPPAEETSSSQSLPDVYILPLAEVSLPMPAPQPSHSDMTTPLGLSRQHLSYLQEIG
SGWFGKVILGEIFSDYTPAQVVVKELRASAGPLEQRKFISEAQPYRSLQHPNVLQCLGLCVETLPFLLIM
EFCQLGDLKRYLRAQRPPEGLSPELPPRDLRTLQRMGLEIARGLAHLHSHNYVHSDLALRNCLLTSDLTV
RIGDYGLAHSNYKEDYYLTPERLWIPLRWAAPELLGELHGTFMVVDQSRESNIWSLGVTLWELFEFGAQP
YRHLSDEEVLAFVVRQQHVKLARPRLKLPYADYWYDILQSCWRPPAQRPSASDLQLQLTYLLSERPPRPP
PPPPPPRDGPFPWPWPPAHSAPRPGTLSSPFPLLDGFPGADPDDVLTVTESSRGLNLECLWEKARRGAGR
GGGAPAWQPASAPPAPHANPSNPFYEALSTPSVLPVISARSPSVSSEYYIRLEEHGSPPEPLFPNDWDPL
DPGVPAPQAPQAPSEVPQLVSETWASPLFPAPRPFPAQSSASGSFLLSGWDPEGRGAGETLAGDPAEVLG
ERGTAPWVEEEEEEEEGSSPGEDSSSLGGGPSRRGPLPCPLCSREGACSCLPLERGDAVAGWGGHPALGC
PHPPEDDSSLRAERGSLADLPMAPPASAPPEFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASP
DPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPG
PLPLPGPREKPTFVVQVSTEQLLMSLREDVTRNLLGEKGATARETGPRKAGRGPGNREKVPGLNRDPTVL
GNGKQAPSLSLPVNGVTVLENGDQRAPGIEEKAAENGALGSPEREEKVLENGELTPPRREEKALENGELR
SPEAGEKVLVNGGLTPPKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEPAPET
SLERAPAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGGRAPVGTG
TAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAGGDTA
LSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRRPPWEGADAGA
AGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAAPGAAAGPRGPGRARAAPVPVVVSSADADAARPLRGLL
KSPRGADEPEDSELERKRKMVSFHGDVTVYLFDQETPTNELSVQAPPEGDTDPSTPPAPPTPPHPATPGD
GFPSNDSGFGGSFEWAEDFPLLPPPGPPLCFSRFSVSPALETPGPPARAPDARPAGPVEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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