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Report for CCDS53129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53129.1 Public Mus musculus X Ppp4r3c1 23 108 98 CCDS HistoryNCBI Gene:245511Re-query CCDS DB by CCDS ID:53129.1Re-query CCDS DB by GeneID:245511See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088146.2 ENSMUSP00000085471.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088146.2Link to Ensembl Protein Viewer:ENSMUSP00000085471.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088146Re-query CCDS DB by Protein ID:ENSMUSP00000085471
Original member Current member NCBI NM_001033880.3 NP_001029052.2 Accepted alive Link to Nucleotide Sequence:NM_001033880.3Link to Protein Sequence:NP_001029052.2Re-query CCDS DB by Nucleotide ID:NM_001033880Re-query CCDS DB by Protein ID:NP_001029052Link to BLAST:NP_001029052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029052.2 813 Q3V0Y1 813 100% 0 0

Chromosomal Locations for CCDS 53129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 89930148 89932589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGACGTGGCCTAGCGAGGCAAGGCCAAATATCAACATGGAGTACAGACTTCATACAGTAAAAGTCTACG
TCATGATGGAAGATAAGCAGTGGAAAAACGTAGGCACAGGGCAAATTTCATCCAAATACAGTGAACAGCT
CCAGGGTGTGTGCCTGCTTGTTCACTCATTATCAGATGGATCACCAATTATGGAGTGCAAGATACATCCT
AATGTGCCCTATCAGAAACAACAAGGGAAAATAATAATTTGGTCTGAAGCTAAGAACCACGGCATGGCAA
TACATTTCCAGGAACCAAATGATTGTCAAGAGATCTGGGAAGATATCTGCCAGATTCAAGGTAAAGACCC
ACATGTAGAAATCACACAAGAACTTACTGATGATCTGGAAACTTTTGAACATATGCCTCTGATCTGGAAT
TGGGTTGAGATGTCAAACTGTGAAATCCATACACTTAAAAATATCGCAGAGTTATTTCCTTTTGTCTTTG
AAATGCCAAGCCAGAAAGAAAGGCTGGCACTGTTCTTAGAAAATGAAGGCTACATTAAAAAATTGCTACA
GCTGTTTCACACTTGTGAAAAACTGAAGAACATGGAAGGATTATACTATTTGCATAACATTATTAAAGGA
ATCCTGTTTCTAAACAACACACGTTTGTTTAACATCATGTTTTCTGATGAATTTTTCATGGATATTGTAG
GATGCCTTGAATATGACCCTGCTTTGGATCAGCCAAAGCAGTACAGGGAATTCTTGACTCAAAATTCGAA
ATTCAAGGAAGTTATACCAATAATACACTCTCAACTTAGGCAAAAAATTCAACAGACCTACAGAATGCAA
TATGTTCATGATATTATGTTGCCTACACCATCCATATTTCAAACGAATCTTCTTTCTGATATTACCACTA
TGATTTTTTTCAACAAAATTAATATAATTACCATGATTCAGGAAGATGAAAATTTTTTGCTCGAAGTTTT
TTCTCAGTTAAAAGATAACAGTATAGGTGATGAAAGGCGGATTGAATTGTTATTATTCCTCAAGGAATTC
TGTGAATTTGCTAAGACATTACAGTCTCAAAAGAAAAATGAGTTACTGAAAACACTTATAAAGTTAGGAA
TCATGAGTGTGCTGAAAGTTGTAGTGCACATGAATGATTACCAAATTCAAGTAGGTGCTCTAGATATATT
TGCTTATCTAGTAGAATATAGTCCATGCTTAGTCCGAGCTTATGCAATGGAAGAAGCTCAGGACAGTGAA
GATAATGATGACCTTCTCATTAATATAATGATCAAGCAAATGATCTGTGATTTTGATCCTGAATTTTCAC
AAGGCATCATTATGACAGCAGTTCTTCATGAACTTCTTAATCCAGAAAATATGCGTACCACAGCTAAGGG
ATGTGAAAGAAAGGTATTTCTGAATTTCTTCTATAAACGTTACATGAGGAAACTTATAGCACCAATTTTG
TCTATCAGAGTAAAATATGACAGCAATGATAATAGGGTTTACATTTGTCCTGATAATTATCAAAATGCAC
AATTGCTTGGAGCAGTTTTAGAAATACTCACATTTTGTGTGCAATATCACTCAATGTACATAAAACATTA
CATTTTTAGCAACAACTTGCTCAGGAGTATCTTGGTGCTAATGAGTTCAAAACACACTTTTCTGATTTTG
TGTGCTGTTCGTTTTATGAGAAAGATTATTGGCCTCAAAGATAAAATGTACAATCATTACATAATTAAGA
AAAACTTGTTTGAACCAGTTGTAAATGCTTTTATGCATAATGGACATCGGTACAATATGTTAAATTCAGC
TATTATTGAGCTATTTGAATTTATAAGAAAAGAAAACATCACGTCTCTGATTGTAAACATTGTGGAAAAT
TTTTTTAGGGCTTTTAAATCAATTGAGTATGTCCAGACCTTTAAAGGTTTGAAAACTAAATATGAAGAAG
AGAAGAAAAGAAAAAGTCAAAGAAGAAAAAATCTACATAGTATAATGCACCCCAAAATGTATTACAGACA
TATCGAAGATATGGAGGTAAAGGTCAAAGCAGACATATGTTGTAGAGGAATCATAGAAGAAGAAGAAAGA
CAAGGAGGGGGAGAAGAAGGAGCTATTCTACCAATGGGAAGTGACTTTACAAATAATTATGACATATTTA
TGAAAAATAAAGATACAAATGAAAGTGAAAGTGCAATAGAAGGCCAAAAGATAAAATCATCTGAAGCTTC
TGAATGTTGTCCATCTCATGGGGATGCTTCTGCTACCAGAATGAGTAGGTCACACTGTAGCAGCCTGGTT
CCTTTAGTGGATTATCTATATGATACTGATGATGAGAATGATGATGATCCTTATGGTAATGATAAACATG
AAGATGAACATGAGGATGAAGATGAAGAACCTCCCCCCAAAAGACCTAATCTTAGTACATGA

Translation (813 aa):
MTWPSEARPNINMEYRLHTVKVYVMMEDKQWKNVGTGQISSKYSEQLQGVCLLVHSLSDGSPIMECKIHP
NVPYQKQQGKIIIWSEAKNHGMAIHFQEPNDCQEIWEDICQIQGKDPHVEITQELTDDLETFEHMPLIWN
WVEMSNCEIHTLKNIAELFPFVFEMPSQKERLALFLENEGYIKKLLQLFHTCEKLKNMEGLYYLHNIIKG
ILFLNNTRLFNIMFSDEFFMDIVGCLEYDPALDQPKQYREFLTQNSKFKEVIPIIHSQLRQKIQQTYRMQ
YVHDIMLPTPSIFQTNLLSDITTMIFFNKINIITMIQEDENFLLEVFSQLKDNSIGDERRIELLLFLKEF
CEFAKTLQSQKKNELLKTLIKLGIMSVLKVVVHMNDYQIQVGALDIFAYLVEYSPCLVRAYAMEEAQDSE
DNDDLLINIMIKQMICDFDPEFSQGIIMTAVLHELLNPENMRTTAKGCERKVFLNFFYKRYMRKLIAPIL
SIRVKYDSNDNRVYICPDNYQNAQLLGAVLEILTFCVQYHSMYIKHYIFSNNLLRSILVLMSSKHTFLIL
CAVRFMRKIIGLKDKMYNHYIIKKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRKENITSLIVNIVEN
FFRAFKSIEYVQTFKGLKTKYEEEKKRKSQRRKNLHSIMHPKMYYRHIEDMEVKVKADICCRGIIEEEER
QGGGEEGAILPMGSDFTNNYDIFMKNKDTNESESAIEGQKIKSSEASECCPSHGDASATRMSRSHCSSLV
PLVDYLYDTDDENDDDPYGNDKHEDEHEDEDEEPPPKRPNLST


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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