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Report for CCDS43963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43963.1 Public Homo sapiens X SPIN3 24 110 108 CCDS HistoryNCBI Gene:169981Re-query CCDS DB by CCDS ID:43963.1Re-query CCDS DB by GeneID:169981See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374919.6 ENSP00000364054.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374919.6Link to Ensembl Protein Viewer:ENSP00000364054.3Re-query CCDS DB by Nucleotide ID:ENST00000374919Re-query CCDS DB by Protein ID:ENSP00000364054
Original member Current member EBI ENST00000639605.1 ENSP00000491179.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639605.1Link to Ensembl Protein Viewer:ENSP00000491179.1Re-query CCDS DB by Nucleotide ID:ENST00000639605Re-query CCDS DB by Protein ID:ENSP00000491179
Original member Current member EBI ENST00000638386.1 ENSP00000491624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638386.1Link to Ensembl Protein Viewer:ENSP00000491624.1Re-query CCDS DB by Nucleotide ID:ENST00000638386Re-query CCDS DB by Protein ID:ENSP00000491624
Original member Current member EBI ENST00000638289.1 ENSP00000491751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638289.1Link to Ensembl Protein Viewer:ENSP00000491751.1Re-query CCDS DB by Nucleotide ID:ENST00000638289Re-query CCDS DB by Protein ID:ENSP00000491751
Original member Current member EBI ENST00000638712.1 ENSP00000492344.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638712.1Link to Ensembl Protein Viewer:ENSP00000492344.1Re-query CCDS DB by Nucleotide ID:ENST00000638712Re-query CCDS DB by Protein ID:ENSP00000492344
Original member Current member EBI ENST00000639007.1 ENSP00000492381.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639007.1Link to Ensembl Protein Viewer:ENSP00000492381.1Re-query CCDS DB by Nucleotide ID:ENST00000639007Re-query CCDS DB by Protein ID:ENSP00000492381
Original member Current member EBI ENST00000638257.1 ENSP00000492795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638257.1Link to Ensembl Protein Viewer:ENSP00000492795.1Re-query CCDS DB by Nucleotide ID:ENST00000638257Re-query CCDS DB by Protein ID:ENSP00000492795
Original member Current member NCBI NM_001010862.3 NP_001010862.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010862.3Link to Protein Sequence:NP_001010862.2Re-query CCDS DB by Nucleotide ID:NM_001010862Re-query CCDS DB by Protein ID:NP_001010862Link to BLAST:NP_001010862.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010862.2 258 Q5JUX0-1 258 100% 0 0

Chromosomal Locations for CCDS 43963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56994171 56994947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGAAGACCCCGTTTGGAAAGGCAGCTGCAGGGCAGCGGTCCAGGACGGGCGCTGGCCACGGCAGTGTGT
CTGTTACCATGATAAAGAGGAAGGCTGCACACAAGAAGCATAGGAGCCGACCCACCTCCCAGCCTCGGGG
GAACATCGTGGGCTGCAGAATTCAGCACGGATGGAAAGATGGAGATGAACCTCTAACACAGTGGAAAGGA
ACCGTTCTGGATCAGGTACCTGTAAATCCCTCTCTGTATCTTATCAAATATGATGGATTTGACTGTGTTT
ATGGATTGGAACTTCACAGAGATGAAAGAGTGTCATCACTTGAAGTCCTTCCTAATAGAGTTGCATCATC
TAGAATCAGTGATACACACTTGGCAGAAATAATGGTTGGCAAAGCAGTGGAACATATTTTTGAGACAGAG
GAAGGTTCCAAAAATGAATGGAGGGGGATGGTCTTAGCTCAGGCACCTGTCATGAACACATGGTTTTACA
TTACCTATGAGAAAGATCCTGTATTATATATGTACCAGCTCTTAGATGATTATAAAGATGGTGACCTCCG
CATCCTTCAAGATTCCAATGATTCTCCTCTGGCAGAGAGGGAGCCAGGAGAAGTCATAGACAGCCTGGTA
GGCAAACAGGTGGAATACGCCAAAGACGATGGCTCCAAGAGAACTGGCATGGTCATTCATCAGGTAGAAG
CAAAACCCTCTGTGTACTTCATCAAATTTGATGATGATTTCCATATCTATGTCTACGATTTGGTAAAAAC
ATCTTAG

Translation (258 aa):
MKTPFGKAAAGQRSRTGAGHGSVSVTMIKRKAAHKKHRSRPTSQPRGNIVGCRIQHGWKDGDEPLTQWKG
TVLDQVPVNPSLYLIKYDGFDCVYGLELHRDERVSSLEVLPNRVASSRISDTHLAEIMVGKAVEHIFETE
EGSKNEWRGMVLAQAPVMNTWFYITYEKDPVLYMYQLLDDYKDGDLRILQDSNDSPLAEREPGEVIDSLV
GKQVEYAKDDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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