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Report for CCDS39961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39961.1 Public Mus musculus 7 Lmtk3 23 108 98 CCDS HistoryNCBI Gene:381983Re-query CCDS DB by CCDS ID:39961.1Re-query CCDS DB by GeneID:381983See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072580.11 ENSMUSP00000072388.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072580.11Link to Ensembl Protein Viewer:ENSMUSP00000072388.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072580Re-query CCDS DB by Protein ID:ENSMUSP00000072388
Original member Current member EBI ENSMUST00000120005.9 ENSMUSP00000112592.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120005.9Link to Ensembl Protein Viewer:ENSMUSP00000112592.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120005Re-query CCDS DB by Protein ID:ENSMUSP00000112592
Original member NCBI NM_001005511.3 NP_001005511.2 Updated not alive Link to Nucleotide Sequence:NM_001005511.3Link to Protein Sequence:NP_001005511.2Re-query CCDS DB by Nucleotide ID:NM_001005511Re-query CCDS DB by Protein ID:NP_001005511
Current member NCBI NM_001005511.4 NP_001005511.2 Accepted alive Link to Nucleotide Sequence:NM_001005511.4Link to Protein Sequence:NP_001005511.2Re-query CCDS DB by Nucleotide ID:NM_001005511Re-query CCDS DB by Protein ID:NP_001005511Link to BLAST:NP_001005511.2
Original member NCBI NM_001290990.1 NP_001277919.1 Updated not alive Link to Nucleotide Sequence:NM_001290990.1Link to Protein Sequence:NP_001277919.1Re-query CCDS DB by Nucleotide ID:NM_001290990Re-query CCDS DB by Protein ID:NP_001277919
Current member NCBI NM_001290990.2 NP_001277919.1 Accepted alive Link to Nucleotide Sequence:NM_001290990.2Link to Protein Sequence:NP_001277919.1Re-query CCDS DB by Nucleotide ID:NM_001290990Re-query CCDS DB by Protein ID:NP_001277919Link to BLAST:NP_001277919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005511.2 1424 Q5XJV6 1424 99.9298% 0 1
NP_001277919.1 1424 Q5XJV6 1424 99.9298% 0 1

Chromosomal Locations for CCDS 39961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45785606 45785681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45786451 45786584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45786810 45786960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45787394 45787470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45787904 45788022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45790875 45790962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45791295 45791443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45792311 45792395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45792477 45792598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45792691 45792840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45793124 45795561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45798199 45798593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45800436 45800571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45800912 45801049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45803632 45803648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4275 nt):
ATGCCTGCACCCGGCGCACTCATCCTCCTGGCGGCCGTCTCCGCCTCCGGCTGCCTGGCGTCCCCAGCGC
ACCCGGATGGATTCGCTCTGAGCCGGGCCCCTTTGGCTCCGCCCTACGCTGTGGTCCTCATTTCCTGTTC
GGGTCTGCTGGCCTTCATCTTTCTCCTCCTTACCTGTCTGTGTTGCAAACGGGGTGATGTTCGTTTCAAG
GAGTTTGAGAACCCGGAAGGGGAGGACTGCTCTGGGGAGTACACCCCCCCTGCGGAGGAGACCTCCTCCT
CACAGTCGCTGCCTGATGTCTATATTCTGCCGCTGGCAGAGGTCTCACTGCCAATGCCTGCCCCGCAGCC
TCCACACTCAGACATCAGCACCCCCCTGGGCCTGAGCCGCCAGCACCTCAGCTACCTGCAGGAGATTGGC
AGCGGCTGGTTTGGGAAGGTGATCCTCGGGGAGGTTTTCTCAGACTACTCGCCAGCCCAGGTGGTGGTGA
AGGAACTCCGGGCTAGTGCCGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGCTCAGCCCTACAGGAG
CCTGCAGCATCCCAACGTCCTCCAGTGCCTGGGCGTCTGTGTGGAGACCTTGCCCTTCCTGTTGATCATG
GAGTTCTGCCAGCTGGGGGACCTGAAGCGATACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCCCCTG
AACTTCCCCCTCGAGACCTTCGGACACTGCAGAGGATGGGTCTAGAGATTGCCCGAGGACTGGCACACCT
GCACTCTCACAACTATGTGCACAGCGATCTGGCGCTGCGCAACTGCCTGCTAACTTCAGACCTGACTGTG
CGTATTGGAGACTATGGGCTGGCGCACAGCAACTACAAGGAAGACTACTACCTGACACCCGAGCGCCTAT
GGGTGCCGCTGCGCTGGGCAGCGCCCGAGCTGCTGGGCGAGCTGCACGGCAGCTTCGTGCTGGTAGATCA
AAGCCGGGAGAGTAATGTCTGGTCCCTGGGGGTGACACTCTGGGAGCTATTCGAGTTCGGGGCACAGCCC
TATCGTCACCTATCGGATGAGGAGGTCCTGGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCGGC
CCAGGCTCAAGCTGCCCTACGCTGACTATTGGTATGACATTTTGCAGTCTTGCTGGCGGCCGCCAGCCCA
GCGCCCCTCAGCTTCTGATCTCCAGCTGCAGCTCACTTACCTGCTGTCTGAGCGGCCCCCCAGGCCCCCT
CCTCCACCACCCCCTCCCCGAGATGGGCCCTTCCCCTGGCCCTGGCCCCCCTCGCATAGTGCGCCGCGCC
CAGGGACCCTGTCCTCCCAGTTCCCCCTTCTGGATGGCTTCCCCGGGGCTGACCCTGATGATGTACTCAC
AGTCACCGAGAGCAGCCGTGGCCTCAACCTTGAGTGCCTGTGGGAGAAGGCCCGCCGTGGGGCAGGCCGG
GGTGGGGGTGCACCTCCCTGGCAACCCGCTTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAATCCCT
TCTATGAGGCGCTGTCCACCCCTAGCGTGCTTCCGGTCATCAGCGCACGCAGTCCCTCGGTGAGCAGCGA
GTACTATATCCGCCTGGAGGAGCACGGTTCTCCACCAGAGCCCCTCTTCCCCAACGACTGGGACCCGCTG
GACCCAGGAGTACCCGGTCCCCAGGCCCCCCAGACTCCCTCCGAGGTCCCTCAGCTGGTGTCCGAGACCT
GGGCTTCCCCCCTCTTCCCCGCGCCCCGACCCTTCCCGGCCCAGTCCTCGGGATCAGGTGGTTTCCTGCT
GAGCGGCTGGGACCCCGAGGGCCGGGGCGCAGGAGAGACCCTGGCAGGAGATCCTGCCGAGGTGCTTGGG
GAACAGGGTACCGCACCCTGGGCCGAAGAGGAGGAGGAAGAGAGCTCCCCAGGCGAGGACAGCAGCAGCC
TTGGAGGGGGACCCAGCCGCAGGGGACCCCTCCCCTGTCCCTTGTGCAGCCGCGAGGGTCCCTGCTCCTG
TCTGCCATTGGAGCGGGGGGACGCTGTGGCCGGCTGGGGGGACCACCCTGCCCTTGGTTGTCCCCACCCC
CCAGAGGACGACTCTTCCTTGCGTGCAGAGCGGGGCTCCTTGGCCGACCTGCCTCTGGTCCCCCCTACCT
CAGCCCCTCTCGAGTTTCTGGACCCCCTTATGGGGGCCGCAGCGCCCCAGTACCCCGGGCGGGGGCCACC
TCCCGCTCCCCCCCCTCCACCGCCCCCTCCCCGGGCCTCCGCGGAACCGGCCGCGTCCCCCGACCCCCCG
TCGGCCCTGGCCAGTCCAGGCTCCGGCCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCGGCTACGAGA
CCGAGACCCCTTTTTCCCCCGAGGGAGCCTTCCCAGGTGGGGGGGCGGCCGAGGAGGAAGGGGTCCCTCG
GCCACGGGCTCCCCCCGAGCCACCCGACCCAGGAGCGCCCCGGCCACCCCCAGACCCGGGTCCCCTCCCA
CTCCCAGGGTCCCAGGAGAAGCCAACCTTTGTAGTTCAGGTGAGCACCGAGCAGCTGCTGATGTCCCTAC
GGGAGGATGTGACAAAGAACCTCCTAGGGGACAAGGGGTCGACACCCGGGGAGACAGGACCCAGGAAGGC
GGGGAGAAGCCCCGCGAACAGAGAGAAGGGCCCAGGCCCGAACAGGGACCTGACATCCCTGGTCAGCAGG
AAGAAAGTCCCCAGCAGGAGCCTTCCAGTGAACGGGGTGACAGTGTTGGAGAACGGGAAGCCAGGAGTCC
CGGACATGAAGGAGAAGGTGGCGGAGAATGGCCTGGAATCTCCGGAGAAAGAAGAGAGAGCCCTGGTGAA
TGGGGAGCCGATGTCCCCAGAGGCCGGGGAGAAGGTGCTGGCGAATGGGGTTCTGATGTCCCCAAAGAGC
GAGGAGAAGGTGGCAGAGAATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGCCACCAGAGATTGGAC
CTCGGAGAGTCCCAGGGCCCTGGGAGAAGACGCCCGAGACTGGGGGTCTAGCTCCCGAGACCCTGCTGGA
TCGAGCCCCTGCGCCCTGCGAGGCAGCCTTGCCCCAGAACGGCTTGGAGATGGCCCCTGGCCAGCTTGGC
CCAGCCCCCAAGAGCGGGAACCCAGACCCCGGGACCGAGTGGAGAGTCCACGAGAGTGGGGGGGCACCGA
GAGCCCCCGGGGCTGGGAAGCTGGACCTCGGGAGTGGGGGCCGAGCCCTGGGGGGCGTGGGGACGGCCCC
CGCCGGCGGCCCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCACCT
CCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGG
CCCAAGAGGAAGAGCCAGGGGTCCCAGACAACAGGCTCGGCGGAGACATGGCCCCCAGCGTAGACGAGGA
CCCCCTCAAGCCGGAGAGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGACTTGGGACCACCTCAGGGG
AACAGCGAGCAGATCAAAGCCAAACTCTCCCGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACGCCGT
TCCCGGGCCCGGGCCCGCGGCGGCCACCTTGGGAGGGCGCGGACGCAGGGGCAGCTGGCGGGGAGGCCGG
CGGGGCGGGGGCGCCGGGGCCAGCGGAGGAGGACGGGGAGGACGAGGACGAGGACGAGGAGGACGAGGAG
GCAGCGGGCTCTCGGGATCCCGGGAGGACGCGGGAAGCCCCAGTGCCCGTCGTGGTGAGCAGCGCCGACG
GGGACACGGTCCGCCCGCTGCGGGGGCTGCTCAAGTCTCCACGCGCGGCCGACGAGCCAGAGGACAGCGA
GCTGGAGAGGAAGCGCAAGATGGTCTCCTTCCACGGGGACGTGACCGTCTACCTCTTCGACCAGGAGACT
CCAACCAACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACACGGAGCCATCAACTCCCCCAGCGCCCC
CGACGCCTCCCCACCCCACCACCCCAGGAGATGGGTTTCCCAACAGCGACAGCGGCTTTGGCGGCAGTTT
CGAGTGGGCGGAGGATTTCCCCCTCCTCCCCCCGCCAGGCCCCCCCCTGTGCTTCTCCCGCTTCTCCGTC
TCACCTGCACTGGAGACCCCGGGGCCTCCCGCCCGGGCTCCCGACGCCCGGCCCGCAGGCCCCGTGGAGA
ACTGA

Translation (1424 aa):
MPAPGALILLAAVSASGCLASPAHPDGFALSRAPLAPPYAVVLISCSGLLAFIFLLLTCLCCKRGDVRFK
EFENPEGEDCSGEYTPPAEETSSSQSLPDVYILPLAEVSLPMPAPQPPHSDISTPLGLSRQHLSYLQEIG
SGWFGKVILGEVFSDYSPAQVVVKELRASAGPLEQRKFISEAQPYRSLQHPNVLQCLGVCVETLPFLLIM
EFCQLGDLKRYLRAQRPPEGMSPELPPRDLRTLQRMGLEIARGLAHLHSHNYVHSDLALRNCLLTSDLTV
RIGDYGLAHSNYKEDYYLTPERLWVPLRWAAPELLGELHGSFVLVDQSRESNVWSLGVTLWELFEFGAQP
YRHLSDEEVLAFVVRQQHVKLARPRLKLPYADYWYDILQSCWRPPAQRPSASDLQLQLTYLLSERPPRPP
PPPPPPRDGPFPWPWPPSHSAPRPGTLSSQFPLLDGFPGADPDDVLTVTESSRGLNLECLWEKARRGAGR
GGGAPPWQPASAPPAPHTNPSNPFYEALSTPSVLPVISARSPSVSSEYYIRLEEHGSPPEPLFPNDWDPL
DPGVPGPQAPQTPSEVPQLVSETWASPLFPAPRPFPAQSSGSGGFLLSGWDPEGRGAGETLAGDPAEVLG
EQGTAPWAEEEEEESSPGEDSSSLGGGPSRRGPLPCPLCSREGPCSCLPLERGDAVAGWGDHPALGCPHP
PEDDSSLRAERGSLADLPLVPPTSAPLEFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRASAEPAASPDPP
SALASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLP
LPGSQEKPTFVVQVSTEQLLMSLREDVTKNLLGDKGSTPGETGPRKAGRSPANREKGPGPNRDLTSLVSR
KKVPSRSLPVNGVTVLENGKPGVPDMKEKVAENGLESPEKEERALVNGEPMSPEAGEKVLANGVLMSPKS
EEKVAENGVLRLPRNTERPPEIGPRRVPGPWEKTPETGGLAPETLLDRAPAPCEAALPQNGLEMAPGQLG
PAPKSGNPDPGTEWRVHESGGAPRAPGAGKLDLGSGGRALGGVGTAPAGGPASAVDAKAGWVDNSRPLPP
PPQPLGAQQRRPEPVPLKARPEVAQEEEPGVPDNRLGGDMAPSVDEDPLKPERKGPEMPRLFLDLGPPQG
NSEQIKAKLSRLSLALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEDEE
AAGSRDPGRTREAPVPVVVSSADGDTVRPLRGLLKSPRAADEPEDSELERKRKMVSFHGDVTVYLFDQET
PTNELSVQGTPEGDTEPSTPPAPPTPPHPTTPGDGFPNSDSGFGGSFEWAEDFPLLPPPGPPLCFSRFSV
SPALETPGPPARAPDARPAGPVEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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