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Report for CCDS52283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52283.1 Public Mus musculus 7 Whamm 23 108 98 CCDS HistoryNCBI Gene:434204Re-query CCDS DB by CCDS ID:52283.1Re-query CCDS DB by GeneID:434204See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165460.1 ENSMUSP00000128881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165460.1Link to Ensembl Protein Viewer:ENSMUSP00000128881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165460Re-query CCDS DB by Protein ID:ENSMUSP00000128881
Original member NCBI NM_001004185.3 NP_001004185.3 Updated not alive Link to Nucleotide Sequence:NM_001004185.3Link to Protein Sequence:NP_001004185.3Re-query CCDS DB by Nucleotide ID:NM_001004185Re-query CCDS DB by Protein ID:NP_001004185
Current member NCBI NM_001004185.4 NP_001004185.3 Accepted alive Link to Nucleotide Sequence:NM_001004185.4Link to Protein Sequence:NP_001004185.3Re-query CCDS DB by Nucleotide ID:NM_001004185Re-query CCDS DB by Protein ID:NP_001004185Link to BLAST:NP_001004185.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004185.3 793 Q571B6-1 793 100% 0 0

Chromosomal Locations for CCDS 52283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81571322 81571909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81574546 81574719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81578151 81578301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81585102 81585271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81586134 81586299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81589338 81589525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81591762 81591848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81592007 81592102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81593652 81594120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81595887 81596179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGACAGCGAGCAGCCCGACAGCCTGGATGGCTGGGTTCCGCTGCGTGAGGACCTCTTCCCGGAGCCCG
AGCGCCATCAGCTGCGTTTCCTGGTGGCCTGGAACGCCGCGAAGGGCCAGTTCGCCGTCACCTGTCACGA
CCGCACGGCGCAGCGGCGGCGGCGCGAGCGGCGGGAGGCCGGCGACGGGGGATGTAGCTGGGCCGGGGTG
CTGTCGCCCGCCGGGTTCCGCGGCGCGCACCGGCAGCTGGCGGCGCTGTGGCCGGCCCTGGAGCCCTGCT
TCCCGCCGCTGCCGCCCGAGCTGGACGCGGCGAGCGGCGCGGGCTGGGGCCTGGGACGCGGGCTGTGGGC
CCTCCTGTGGCCGCTCCTGTGGCCGGCGCCTGCGGACCCTGGCGACTCGGCGCTGCAGGAGCTGTGCCGG
CAGCTGGAGCACTACCTGGGCCTGGCGGCCGAAGGATGCGGCGGCGCCACCGTGCGCGACGTGCTCTTCC
CGGCCCCGGGTGACTCGGCAGACTGCGAGGGCCTGAGCGAGTTCCGCGAGAGGACGCTGCGCGCTCGCCT
GGGCCAAACGGCCACCCGGCTGCACCAGGTTCTTCAAGATCACGGGAAAGCCAATACCATGGTAGCATTA
ATGAAAGTTTATCAAGAGGAAGATGAGCTCTATCAAGAATTAGTTACCATGGCAACCACATTCTTCCAGT
ATTTACTGCAGCCATTTAGAGACATGCGAGAAGTTGCAACTTCATGTAAGCTTGGTATTTTGAAGTCCCT
GGATGAGGATGAGCTGGGTCCTAGAAGGGTGGCTGCCCTACAGAAGGAAGCCAGTGAATGGACCAGACAG
GCTGAAGAAGCAGTGGGCTCTATCCAAGACATCACTGTGAATTATTTTAAAGAAACAGTAACAGCACTAA
CAGGAATGCAGAAACAAATGGAGCAGGATCAGAAGAGATTTGGCCAGGCTGCCTGGGCCACAGCCATGCC
CAGGCTAGAAAATCTCAAGCTCATGTTAGCTCGGGAGACTCTGCAGCTTATGAGAGCCAAAGAGCTGTGT
CTAAAACACAGGCAAGCTGAAATCCAGAGAAAGGTGGAAGATCTTCCGCGCCAAGGAAAGCAGTTAGATG
TTGTGGATGAGCTGGAGATACAGTGTTATGAGATCCAGTTGGAGTTGTATGATGTCAAGCTTGAGATGCT
GAGAAATGAGGAGACAATCCTTGTCACGCGGTTGGACTCTGTTAAGAGACTTATAACAGAGAAGCAGGCT
GAAGTGATCTACTACGACCCGTGTGAGAGCCCCGAGGAGCTGCAGAGCCTGGCTCCTGACCTGGAACTGC
ACCTTGGTGACAACAGAGAGCTGAGAGCACTCAGCCAGCAGTGCCAGCGGCTGGAGGCTCAGCGGGGCCG
CATCTGCTCCAGGAGAGCCCTCCTTAGGAACAGAAAGGATCACTGCCGAGAAAATCATCAGCTCAGACTG
CAGCAGGCCAAACAAAGTCTGAGACACCTTCACCAGCACCACAGTATTCAAATGAAGAGAGACAAAGTAA
AAGAGGAAGAACAAAAGAAAAAAGAATGGATAGACCATGAACGCCAGAAAACCCTTGAGCGGCTAAGAGC
ATATAAGGAGAAGTGCCCGGCTCATCGGTCTGCACTGAAAACAACTTGTTCAGAGTCCATGGTGTCAAAC
CTGCCAGGTGGGCGCTCTCAGAAGAGGCTCTCAACGGCTCACCACCACAAGACAGCTCATCCTGCCTCCA
GCAAAACCGGAAGTGCTGTTCCCTTACCTGAAGCCAGTGTGAGACCCCCTGAGCATCAAGACCCCTGTGG
CAGTGTCCCTGTCCAGGCTTTTGTTCCTGTTAGTGACCAGACACTGTCTGGATCCAGTGAAGATCTGTCA
CTACCACCACAGCCACCAGCTCCTCCTCTCCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCCTCTTCCCC
CTGCTCTGTCCTCTTTTCAAGGTACCACTCATCAGAATTTAGGGCTCAGGACTTTGGCAACAGAGGACCG
GCCACTCCCACTAGCGTGTGACCCATCTGCTGGGAGACCATGTGACTACCAGGGTCCAGGCTCTATGGAT
GAAGTGCTGGCCTCTCTCCGGCAGGGCAAAGCCTCTCTCCGGAAAGTAGAAACGCCCACCTTGCCCCATC
CTGGCACCTCAGTCAATGAACAAGTTCTGGCTGCCATCAGACAGGGCGTGCAGCTGAAGAAAGTCCACAC
GGGCCAAGGTGTGGATCCCGGCAAGAAGAGCACCAGCGACCTGGAGAGGAGCATCAGAGAAGCCCTGGAG
AGAATCAAGAAAGTTTCTGCCGACTCAGAGGAGGACAATGATGAGCCGAGCCCCACTGAGTGGGACCGCT
AG

Translation (793 aa):
MDSEQPDSLDGWVPLREDLFPEPERHQLRFLVAWNAAKGQFAVTCHDRTAQRRRRERREAGDGGCSWAGV
LSPAGFRGAHRQLAALWPALEPCFPPLPPELDAASGAGWGLGRGLWALLWPLLWPAPADPGDSALQELCR
QLEHYLGLAAEGCGGATVRDVLFPAPGDSADCEGLSEFRERTLRARLGQTATRLHQVLQDHGKANTMVAL
MKVYQEEDELYQELVTMATTFFQYLLQPFRDMREVATSCKLGILKSLDEDELGPRRVAALQKEASEWTRQ
AEEAVGSIQDITVNYFKETVTALTGMQKQMEQDQKRFGQAAWATAMPRLENLKLMLARETLQLMRAKELC
LKHRQAEIQRKVEDLPRQGKQLDVVDELEIQCYEIQLELYDVKLEMLRNEETILVTRLDSVKRLITEKQA
EVIYYDPCESPEELQSLAPDLELHLGDNRELRALSQQCQRLEAQRGRICSRRALLRNRKDHCRENHQLRL
QQAKQSLRHLHQHHSIQMKRDKVKEEEQKKKEWIDHERQKTLERLRAYKEKCPAHRSALKTTCSESMVSN
LPGGRSQKRLSTAHHHKTAHPASSKTGSAVPLPEASVRPPEHQDPCGSVPVQAFVPVSDQTLSGSSEDLS
LPPQPPAPPLPPPPPPPPPPPLPPALSSFQGTTHQNLGLRTLATEDRPLPLACDPSAGRPCDYQGPGSMD
EVLASLRQGKASLRKVETPTLPHPGTSVNEQVLAAIRQGVQLKKVHTGQGVDPGKKSTSDLERSIREALE
RIKKVSADSEEDNDEPSPTEWDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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