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Report for CCDS41845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41845.1 Public Homo sapiens 12 BICDL1 24 110 108 CCDS HistoryNCBI Gene:92558Re-query CCDS DB by CCDS ID:41845.1Re-query CCDS DB by GeneID:92558See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397558.6 ENSP00000380690.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397558.6Link to Ensembl Protein Viewer:ENSP00000380690.2Re-query CCDS DB by Nucleotide ID:ENST00000397558Re-query CCDS DB by Protein ID:ENSP00000380690
Original member Current member NCBI NM_207311.2 NP_997194.2 Accepted alive Link to Nucleotide Sequence:NM_207311.2Link to Protein Sequence:NP_997194.2Re-query CCDS DB by Nucleotide ID:NM_207311Re-query CCDS DB by Protein ID:NP_997194Link to BLAST:NP_997194.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997194.2 573 Q6ZP65-1 573 100% 0 0

Chromosomal Locations for CCDS 41845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 119989869 119990297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119998521 119998736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120061710 120061826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120064733 120064879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120071622 120071801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120072511 120072729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120080887 120081017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120089951 120090071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120093000 120093161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGTCCGCTTTCTGCCTGGGCTTGGTCGGCCGCGCTTCAGCACCCGCCGAGCCGGACAGCGCCTGCTGCA
TGGAGCTGCCCGCCGCGGCCGGGGACGCAGTCCGGAGTCCCGCCGCCGCCGCCGCCCTCATCTTCCCCGG
GGGCTCCGGGGAGCTAGAACTGGCGTTAGAGGAGGAGCTGGCGCTGCTGGCGGCCGGGGAGCGGCCGTCC
GACCCCGGGGAACACCCTCAGGCCGAGCCTGGGTCTCTGGCCGAGGGGGCCGGACCGCAGCCGCCGCCCT
CCCAGGACCCCGAGCTGCTGTCGGTGATCCGACAGAAGGAGAAGGATCTGGTGTTGGCGGCCCGGCTGGG
TAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCATAAGGAGCTGACAGAC
AAGCTCGAGCACTTAGAGCAAGAGAAACATGAATTGAGAAGACGATTTGAGAACCGAGAAGGGGAGTGGG
AAGGCCGAGTGTCAGAGCTGGAGAGTGATGTGAAGCAGCTACAGGATGAGTTGGAGAGGCAGCAGATTCA
TCTGCGGGAAGCAGATCGAGAAAAATCACGGGCTGTCCAGGAACTGTCGGAACAGAACCAAAGGCTATTG
GATCAGCTCAGCAGGGCATCAGAAGTTGAGAGACAACTCTCCATGCAGGTCCACGCCCTCAGAGAAGACT
TTCGGGAGAAAAACTCATCAACCAACCAGCACATTATCCGGCTGGAGAGCCTTCAGGCCGAGATCAAGAT
GCTGTCAGATCGGAAACGGGAGCTGGAGCATCGTCTCAGCGCTACTTTAGAGGAAAATGACCTGCTCCAA
GGGACCGTGGAGGAGCTACAGGACCGGGTGCTAATCCTGGAGAGGCAGGGCCATGACAAGGACCTACAGC
TGCACCAAAGCCAGCTGGAGCTTCAGGAGGTGCGTCTCTCCTGCCGACAGCTGCAGGTGAAGGTGGAAGA
ACTCACTGAGGAGAGGAGTCTGCAGAGCTCTGCCGCCACCAGCACATCCCTCCTGTCAGAGATCGAGCAG
AGCATGGAGGCTGAGGAGCTGGAGCAGGAGCGAGAGCAGCTGAGACTGCAGCTCTGGGAAGCCTACTGCC
AGGTTCGCTATCTGTGCTCACACCTTCGAGGCAATGACAGTGCTGACTCAGCCGTCTCCACGGACTCCTC
CATGGACGAGTCTTCAGAAACCTCGTCCGCCAAGGATGTGCCAGCCGGCAGCTTGCGCACTGCCCTCAAT
GAGCTCAAGAGACTGATACAGAGCATTGTGGATGGCATGGAGCCCACGGTGACACTGCTGAGTGTGGAGA
TGACTGCCCTAAAAGAGGAGAGAGACCGACTCAGAGTCACTTCTGAGGACAAGGAGCCAAAGGAGCAGCT
TCAGAAGGCCATCAGGGACCGCGACGAGGCCATTGCAAAGAAGAATGCTGTGGAGCTGGAACTTGCCAAG
TGCAGGATGGATATGATGTCTCTGAACAGCCAGTTGCTGGATGCCATTCAGCAGAAACTGAACCTCTCGC
AGCAGCTGGAAGCTTGGCAGGATGACATGCACAGGGTCATTGACCGGCAGCTGATGGACACGCACCTGAA
AGAACGGAGCCAGCCGGCTGCTGCCCTCTGCAGGGGCCACAGCGCTGGGCGGGGGGATGAGCCCAGCATC
GCTGAAGGCAAACGACTCTTCTCATTCTTCAGGAAAATTTAA

Translation (573 aa):
MSAFCLGLVGRASAPAEPDSACCMELPAAAGDAVRSPAAAAALIFPGGSGELELALEEELALLAAGERPS
DPGEHPQAEPGSLAEGAGPQPPPSQDPELLSVIRQKEKDLVLAARLGKALLERNQDMSRQYEQMHKELTD
KLEHLEQEKHELRRRFENREGEWEGRVSELESDVKQLQDELERQQIHLREADREKSRAVQELSEQNQRLL
DQLSRASEVERQLSMQVHALREDFREKNSSTNQHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLLQ
GTVEELQDRVLILERQGHDKDLQLHQSQLELQEVRLSCRQLQVKVEELTEERSLQSSAATSTSLLSEIEQ
SMEAEELEQEREQLRLQLWEAYCQVRYLCSHLRGNDSADSAVSTDSSMDESSETSSAKDVPAGSLRTALN
ELKRLIQSIVDGMEPTVTLLSVEMTALKEERDRLRVTSEDKEPKEQLQKAIRDRDEAIAKKNAVELELAK
CRMDMMSLNSQLLDAIQQKLNLSQQLEAWQDDMHRVIDRQLMDTHLKERSQPAAALCRGHSAGRGDEPSI
AEGKRLFSFFRKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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