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Report for CCDS30000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30000.1 Public Mus musculus X Ssxb13 23 108 98 CCDS HistoryNCBI Gene:382206Re-query CCDS DB by CCDS ID:30000.1Re-query CCDS DB by GeneID:382206See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103001.3 ENSMUSP00000100066.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103001.3Link to Ensembl Protein Viewer:ENSMUSP00000100066.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103001Re-query CCDS DB by Protein ID:ENSMUSP00000100066
Original member Current member NCBI NM_199063.2 NP_951018.1 Accepted alive Link to Nucleotide Sequence:NM_199063.2Link to Protein Sequence:NP_951018.1Re-query CCDS DB by Nucleotide ID:NM_199063Re-query CCDS DB by Protein ID:NP_951018Link to BLAST:NP_951018.1

Chromosomal Locations for CCDS 30000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8748476 8748544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8749000 8749114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8749414 8749503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8749978 8750027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8750639 8750714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8754026 8754138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGAAACACTGAGATCCTGTGAAAAGATCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGG
CCTTCCAGGATATTTCTACATACTACTCTGATGAAGAGTGGGGAAAGCTGACTCAATGGCAGAAAAGTGC
CTACGTGTACATGAAAAGAAACTACATCAGAATGACTGACCTAGGTGTCACCATGAACCAACCAGTTTTC
ATGCGTGGCAAGGAGCAGGCCAAGCAATCCCTGTTCGAAGGCATTGAAGTTCATGACAGTGATGTTGAAT
GCTTTGAAGGATCTTTTGGTGTGATACCGAGAAAACGAATGAAGCTGACATTGGTGACAATAAGTATTCG
TAATGTAGAAGAAAGACTTGCCTCTGGAGAGCATGATTCCAACTTGGCAGAAACTGGTGGCATTCAGGTC
AATGTTTGGAGCAACCGGCTGCGAGAGAGGAAATATCGAGTGATATATTCAGAGATTAGTTATCCTGAAG
AGGAAGAAGATGATGATTACTGA

Translation (170 aa):
METLRSCEKIPMEVLYEPKNICKAFQDISTYYSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTMNQPVF
MRGKEQAKQSLFEGIEVHDSDVECFEGSFGVIPRKRMKLTLVTISIRNVEERLASGEHDSNLAETGGIQV
NVWSNRLRERKYRVIYSEISYPEEEEDDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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