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Report for CCDS21123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21123.1 Public Mus musculus 7 Fxyd1 23 108 98 CCDS HistoryNCBI Gene:56188Re-query CCDS DB by CCDS ID:21123.1Re-query CCDS DB by GeneID:56188See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039909.12 ENSMUSP00000048460.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039909.12Link to Ensembl Protein Viewer:ENSMUSP00000048460.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039909Re-query CCDS DB by Protein ID:ENSMUSP00000048460
Original member Current member EBI ENSMUST00000071697.10 ENSMUSP00000071617.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071697.10Link to Ensembl Protein Viewer:ENSMUSP00000071617.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071697Re-query CCDS DB by Protein ID:ENSMUSP00000071617
Original member Current member EBI ENSMUST00000108110.4 ENSMUSP00000103745.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108110.4Link to Ensembl Protein Viewer:ENSMUSP00000103745.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108110Re-query CCDS DB by Protein ID:ENSMUSP00000103745
Original member Current member EBI ENSMUST00000206305.1 ENSMUSP00000145589.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206305.1Link to Ensembl Protein Viewer:ENSMUSP00000145589.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206305Re-query CCDS DB by Protein ID:ENSMUSP00000145589
Original member Current member EBI ENSMUST00000206328.1 ENSMUSP00000145712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206328.1Link to Ensembl Protein Viewer:ENSMUSP00000145712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206328Re-query CCDS DB by Protein ID:ENSMUSP00000145712
Original member Current member EBI ENSMUST00000205778.1 ENSMUSP00000145818.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205778.1Link to Ensembl Protein Viewer:ENSMUSP00000145818.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205778Re-query CCDS DB by Protein ID:ENSMUSP00000145818
Original member Current member EBI ENSMUST00000206474.1 ENSMUSP00000145920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206474.1Link to Ensembl Protein Viewer:ENSMUSP00000145920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206474Re-query CCDS DB by Protein ID:ENSMUSP00000145920
Original member Current member EBI ENSMUST00000205439.1 ENSMUSP00000146064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205439.1Link to Ensembl Protein Viewer:ENSMUSP00000146064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205439Re-query CCDS DB by Protein ID:ENSMUSP00000146064
Original member Current member EBI ENSMUST00000206860.1 ENSMUSP00000146288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206860.1Link to Ensembl Protein Viewer:ENSMUSP00000146288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206860Re-query CCDS DB by Protein ID:ENSMUSP00000146288
Original member Current member EBI ENSMUST00000206012.1 ENSMUSP00000146295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206012.1Link to Ensembl Protein Viewer:ENSMUSP00000146295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206012Re-query CCDS DB by Protein ID:ENSMUSP00000146295
Original member Current member NCBI NM_052991.4 NP_443717.1 Accepted alive Link to Nucleotide Sequence:NM_052991.4Link to Protein Sequence:NP_443717.1Re-query CCDS DB by Nucleotide ID:NM_052991Re-query CCDS DB by Protein ID:NP_443717Link to BLAST:NP_443717.1
Original member Current member NCBI NM_052992.3 NP_443718.1 Accepted alive Link to Nucleotide Sequence:NM_052992.3Link to Protein Sequence:NP_443718.1Re-query CCDS DB by Nucleotide ID:NM_052992Re-query CCDS DB by Protein ID:NP_443718Link to BLAST:NP_443718.1
Original member Current member NCBI NM_194321.2 NP_919302.1 Accepted alive Link to Nucleotide Sequence:NM_194321.2Link to Protein Sequence:NP_919302.1Re-query CCDS DB by Nucleotide ID:NM_194321Re-query CCDS DB by Protein ID:NP_919302Link to BLAST:NP_919302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443717.1 92 Q9Z239 92 100% 0 0
NP_443718.1 92 Q9Z239 92 100% 0 0
NP_919302.1 92 Q9Z239 92 100% 0 0

Chromosomal Locations for CCDS 21123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31051965 31051987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31052128 31052177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31053025 31053061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31053400 31053474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31053893 31053925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31054306 31054366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (279 nt):
ATGGCATCTCCCGGCCACATCCTGGCTCTGTGTGTGTGTCTCCTCTCCATGGCCAGTGCAGAAGCTCCAC
AGGAACCGGATCCATTCACCTACGATTACCACACCCTGCGGATCGGCGGCCTCACTATCGCTGGGATCCT
CTTCATCTTGGGCATCCTTATCATCCTTAGCAAGAGATGTCGATGCAAATTCAACCAACAGCAGAGAACT
GGGGAACCCGACGAAGAGGAGGGAACTTTCCGCAGCTCCATCCGCCGTCTGTCATCCCGCAGGCGGTAG

Translation (92 aa):
MASPGHILALCVCLLSMASAEAPQEPDPFTYDYHTLRIGGLTIAGILFILGILIILSKRCRCKFNQQQRT
GEPDEEEGTFRSSIRRLSSRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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