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Report for CCDS20024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20024.1 Public Mus musculus 6 Adck2 23 108 98 CCDS HistoryNCBI Gene:57869Re-query CCDS DB by CCDS ID:20024.1Re-query CCDS DB by GeneID:57869See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140364.7 ENSMUSP00000123563.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140364.7Link to Ensembl Protein Viewer:ENSMUSP00000123563.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140364Re-query CCDS DB by Protein ID:ENSMUSP00000123563
Original member Current member NCBI NM_178873.3 NP_849204.1 Accepted alive Link to Nucleotide Sequence:NM_178873.3Link to Protein Sequence:NP_849204.1Re-query CCDS DB by Nucleotide ID:NM_178873Re-query CCDS DB by Protein ID:NP_849204Link to BLAST:NP_849204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849204.1 617 Q6NSR3 617 99.8379% 0 1

Chromosomal Locations for CCDS 20024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 39574301 39575206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39576363 39576509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39579663 39579791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39580996 39581091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39583811 39584062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39585727 39585855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39586841 39586894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39587369 39587509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGTGACCCCCTGGCGTTTGTCTGTCAGGGTCTGCTTGTCACACTTAAGATGCTTTGAGTTCAGAAAGG
AACTTGGGCATTCCAGACCCCTGGGATGCTCTCGCAATGCCAGACTATGTTGGTTTCTGCTAGGTACTTT
GCCCAAATTAATCTCAGCCCATGGCAGTGTTGGAGAGGGGGCGCCTGGCAGCTTGTGCCAGAGAAAGACT
CACTGGAGTGACCTGGCGGAAAATGGACTAGTGGAGAAGGTGGCCCAAGAAGGGCCTCTGGCCCGCGTCT
TACTGTGTCTCCGCCTAGGGCTCCGCGCTGGTGTGCTCTTGGCGAAATTCTTCCCCCTCCTCTTCTTGTA
CCCTCTCACCTACTTGGCCCCTGGCCTCTCCACCCTCTGGCTCCATCTGCTTTTCAAAGCTACAGAGACC
TCAGGCCCAACATATATCAAATTGGGCCAATGGGCCAGCACCCGGCGCGACCTCTTTTCAGAGGCTTTCT
GTACCCAGTTCTCCAAGCTGCATGTCCAGGTGACCCCCCACCCTTGGGCAAGGACGGAATACTTACTCCA
GCAGGCATTTGGGGAGGATTGGGGCAGCCTCCTCTTTTTCGAGACCCGGGAACCTGTAGGTTCAGGTTGT
GTGGCCCAAGTGTACAAAGCGTTCGCTAGTATTTCCTTGTTGGAGGAAGACAGGATCTGGAGACTTGGGG
AGCTCTCTGCCCCAGGAACCAGGGCCGTGGTGATGCAGAGAGAGCCCTTTATGAAAGACCGGAAGCCTTC
AGAAAACCTTGCCGACGAAGCATTTCTAGAAAAACTGCTTCTTCCTAAAGCTGACCTTGGTGGGTCAGAA
GTGGGTGTGTCTCAGGCTCCCTGGCATCTGCCTAAGTCAGATCACCTCATCCCAGTGGCAGTGAAAGTAT
TACACCCAGGCTTGCTCTCTCAGGTGTCCATGGATTTACTGCTGATGAAGATTGGCAGCAAAGCCCTGGG
GCTTTTACCTGGAGTCAAATGGCTTAGCTTGCCTGAGATCGTGGAGGAATTCGAGAAGCTCATGGTCCAA
CAGACAGACCTGCGCTATGAAGCTCAGAATCTAGAGCACTTTCAGCACAACTTCCAGGACATGGCATCTG
TGAAATTTCCCACCCCACTGCGCCCCCTCATCACTAGGGATATTCTGGTGGAAACGTATGAAGAGAGTGT
TCCAGTGTCCAGCTACCAGCAGGCAGGAATTCCCACCGATCTGAAGAGGAAGATTGCACAGCTGGGGATC
AACATGCTTTTGAAGATGATATTTGTGGATAACTTTGTACACGGAGATCTACACCCTGGAAACATCCTGG
TCCAGGGTGCTGATGGAGTGTCCCCAAGCCTGGAGATGCAACAGCAGCAGGTGAATGTCTGTGACACACT
GGTGGCTACCATAGCGCCTGCCCTGTGCCCACTGCGCCTGGTGTTGTTGGATGCTGGCATTGTGGCAAAA
CTGCAGGCTTCTGACCTGAGGAATTTCCGGGCAGTTTTCCAGGCTGTAGTGATGGGACAGGGCCATCGAG
TGGCTGAGCTCATGCTGCATCATGCCCAGGCCAATGAGTGCAAGGATGTGGAAAGGTTCAAGGCTGAGAT
GGCTACACTGGTGACCCAGGCCAGGAAGAACATCGTCACACTGGAAAAGCTTCATGTTTCCAGCCTCCTA
TCCAGTGTCTTTAAGCTACTGATGACCCATAAGGTAAAGCTGGAGAGCAACTTCGCCTCCATTGTGGTTG
CCATCATGGTGCTGGAGGGGCTCGGCCGCTCACTGGACCCCACGCTGGACATCCTAGAGGCAGCAAAACC
CTTCCTCTTCAAAGGGCCAGCATCATTCCTGTGA

Translation (617 aa):
MVTPWRLSVRVCLSHLRCFEFRKELGHSRPLGCSRNARLCWFLLGTLPKLISAHGSVGEGAPGSLCQRKT
HWSDLAENGLVEKVAQEGPLARVLLCLRLGLRAGVLLAKFFPLLFLYPLTYLAPGLSTLWLHLLFKATET
SGPTYIKLGQWASTRRDLFSEAFCTQFSKLHVQVTPHPWARTEYLLQQAFGEDWGSLLFFETREPVGSGC
VAQVYKAFASISLLEEDRIWRLGELSAPGTRAVVMQREPFMKDRKPSENLADEAFLEKLLLPKADLGGSE
VGVSQAPWHLPKSDHLIPVAVKVLHPGLLSQVSMDLLLMKIGSKALGLLPGVKWLSLPEIVEEFEKLMVQ
QTDLRYEAQNLEHFQHNFQDMASVKFPTPLRPLITRDILVETYEESVPVSSYQQAGIPTDLKRKIAQLGI
NMLLKMIFVDNFVHGDLHPGNILVQGADGVSPSLEMQQQQVNVCDTLVATIAPALCPLRLVLLDAGIVAK
LQASDLRNFRAVFQAVVMGQGHRVAELMLHHAQANECKDVERFKAEMATLVTQARKNIVTLEKLHVSSLL
SSVFKLLMTHKVKLESNFASIVVAIMVLEGLGRSLDPTLDILEAAKPFLFKGPASFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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