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Report for CCDS13163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13163.1 Public Homo sapiens 20 GGTLC1 24 110 108 CCDS HistoryNCBI Gene:92086Re-query CCDS DB by CCDS ID:13163.1Re-query CCDS DB by GeneID:92086See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13163.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278765.8 ENSP00000278765.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000278765.8Link to Ensembl Protein Viewer:ENSP00000278765.4Re-query CCDS DB by Nucleotide ID:ENST00000278765Re-query CCDS DB by Protein ID:ENSP00000278765
Original member Current member EBI ENST00000286890.8 ENSP00000286890.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286890.8Link to Ensembl Protein Viewer:ENSP00000286890.4Re-query CCDS DB by Nucleotide ID:ENST00000286890Re-query CCDS DB by Protein ID:ENSP00000286890
Original member Current member EBI ENST00000335694.4 ENSP00000337587.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335694.4Link to Ensembl Protein Viewer:ENSP00000337587.4Re-query CCDS DB by Nucleotide ID:ENST00000335694Re-query CCDS DB by Protein ID:ENSP00000337587
Original member Current member NCBI NM_178311.3 NP_842563.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178311.3Link to Protein Sequence:NP_842563.1Re-query CCDS DB by Nucleotide ID:NM_178311Re-query CCDS DB by Protein ID:NP_842563Link to BLAST:NP_842563.1
Original member Current member NCBI NM_178312.3 NP_842564.1 Accepted alive Link to Nucleotide Sequence:NM_178312.3Link to Protein Sequence:NP_842564.1Re-query CCDS DB by Nucleotide ID:NM_178312Re-query CCDS DB by Protein ID:NP_842564Link to BLAST:NP_842564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_842563.1 225 Q9BX51 225 100% 0 0
NP_842564.1 225 Q9BX51 225 100% 0 0

Chromosomal Locations for CCDS 13163.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23985216 23985362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23985667 23985780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23985862 23985974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23986076 23986203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23986436 23986611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGACCTCCGAGTTCTTCTCTGCCCAGCTCCGGGCCCAGATCTCTGACGACACCACTCACCCGATCTCCT
ACTACAAGCCCGAGTTCTACATGCCGGATGACGGGGGCACTGCTCACCTGTCTGTGGTCGCAGAGGACGG
CAGTGCTGTGTCCGCCACCAGCACCATCAACCTCTACTTTGGCTCCAAGGTGCGCTCCCCAGTCAGCGGG
ATCCTGCTCAATAATGAAATGGATGACTTCAGCTCTACCAGCATCACCAACGAGTTTGGGGTACCCCCCT
CACCTGCCAATTTCATCCAGCCAGGGAAGCAGCCGCTCTCGTCCATGTGCCCGACGATCATGGTGGGCCA
GGACGGCCAGGTCCGGATGGTGGTGGGAGCTGCCGGGGGCACGCAGATCACCATGGCCACTGCACTGGCC
ATCATCTACAACCTCTGGTTCGGCTATGACGTGAAGTGGGCCGTGGAGGAGCCCCGGCTGCACAACCAGC
TTCTGCCCAACGTCACGACAGTGGAGAGAAACATTGACCAGGAAGTGACTGCAGCCCTGGAGACCCGGCA
CCATCACACCCAGATCACGTCCACCTTCATTGCTGTGGTGCAAGCCATCGTCCGCATGGCTGGTGGCTGG
GCAGCTGCCTCGGACTCCAGGAAAGGTGGGGAACCTGCTGGCTACTGA

Translation (225 aa):
MTSEFFSAQLRAQISDDTTHPISYYKPEFYMPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSG
ILLNNEMDDFSSTSITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITMATALA
IIYNLWFGYDVKWAVEEPRLHNQLLPNVTTVERNIDQEVTAALETRHHHTQITSTFIAVVQAIVRMAGGW
AAASDSRKGGEPAGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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