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Report for CCDS38545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38545.1 Public Mus musculus 3 Cdc42se1 23 108 98 CCDS HistoryNCBI Gene:57912Re-query CCDS DB by CCDS ID:38545.1Re-query CCDS DB by GeneID:57912See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053872.11 ENSMUSP00000052986.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053872.11Link to Ensembl Protein Viewer:ENSMUSP00000052986.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053872Re-query CCDS DB by Protein ID:ENSMUSP00000052986
Original member Current member EBI ENSMUST00000107201.8 ENSMUSP00000102819.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107201.8Link to Ensembl Protein Viewer:ENSMUSP00000102819.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107201Re-query CCDS DB by Protein ID:ENSMUSP00000102819
Original member Current member NCBI NM_001038708.3 NP_001033797.1 Accepted alive Link to Nucleotide Sequence:NM_001038708.3Link to Protein Sequence:NP_001033797.1Re-query CCDS DB by Nucleotide ID:NM_001038708Re-query CCDS DB by Protein ID:NP_001033797Link to BLAST:NP_001033797.1
Original member Current member NCBI NM_172395.3 NP_765983.1 Accepted alive Link to Nucleotide Sequence:NM_172395.3Link to Protein Sequence:NP_765983.1Re-query CCDS DB by Nucleotide ID:NM_172395Re-query CCDS DB by Protein ID:NP_765983Link to BLAST:NP_765983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033797.1 80 Q8BHL7 80 100% 0 0
NP_765983.1 80 Q8BHL7 80 100% 0 0

Chromosomal Locations for CCDS 38545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95232039 95232092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95232549 95232659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95233488 95233565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGAGCGAGTTTTGGCACAAACTGGGCTGCTGCGTGGTCGAGAAGCCCCAGCCGAAGAAAAAGAGAAGAC
GGATTGACCGCACTATGATTGGGGAGCCAATGAACTTTGTCCACCTGACTCACATCGGCTCTGGGGAGAT
GGGGGCTGGAGATGGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATGAGATCCAAGGGAAACCACCGT
GACAGACCGTGGAGCAATTCTAGGGCCTTGTAG

Translation (80 aa):
MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQEQMRSKGNHR
DRPWSNSRAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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