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Report for CCDS14838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14838.1 Public Mus musculus 1 Tfap2d 23 108 98 CCDS HistoryNCBI Gene:226896Re-query CCDS DB by CCDS ID:14838.1Re-query CCDS DB by GeneID:226896See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037294.7 ENSMUSP00000037699.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037294.7Link to Ensembl Protein Viewer:ENSMUSP00000037699.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037294Re-query CCDS DB by Protein ID:ENSMUSP00000037699
Original member Current member NCBI NM_153154.3 NP_694794.1 Accepted alive Link to Nucleotide Sequence:NM_153154.3Link to Protein Sequence:NP_694794.1Re-query CCDS DB by Nucleotide ID:NM_153154Re-query CCDS DB by Protein ID:NP_694794Link to BLAST:NP_694794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694794.1 452 Q91ZK0 452 100% 0 0

Chromosomal Locations for CCDS 14838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19103256 19103294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19104364 19104861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19108250 19108310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19118830 19118995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19119162 19119280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19142837 19142978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19148304 19148417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19165959 19166178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTCAACTACCTTTCCCGGACTAGTCCACGATGCGGAGATACGTCACGACGGATCAAACAGCTACCGTT
TGATGCAGCTTGGCTGTCTGGAGTCCGTAGCCAATTCCACGGTTGCCTATTCCTCCTCCTCTCCTTTAAC
TTACTCTACCACCGGCACCGAGTTTGCGTCCCCCTACTTCTCCACTAACCACCAGTACACCCCGCTCCAC
CACCAGTCCTTCCATTACGAGTTCCAGCACAGCCACCCGGCGGTCACTCCCGACGCCTACTCTCTGAACT
CGCTCCACCACTCACAACAGTACTACCAGCAGATTCACCACGGGGAGCCCACCGACTTTATTAACCTGCA
CAATGCGCGGGCTCTCAAGTCCTCCTGCCTGGACGAGCAGAGGCGGGAGCTGGGTTGCCTCGATGCCTAC
CGCCGCCACGACCTGTCCCTCATGAGCCATGGCTCTCAGTATGGAATGCACCCAGATCAAAGACTCCTGC
CAGGGCCCAGCCTGGGGCTGGCCGCCGCGGGAGCCGACGACTTGCAGGGTTCCGTGGAAGCCCAGTGTGG
GATTGTTCTCAACGGCCAAGGGGGGGTGATCAGAAGAGGTGGCACCTGTGTAGTCAACCCCACAGACTTG
TTTTGCTCAGTTCCCGGTCGTTTGTCTCTTCTCAGTTCTACTTCCAAATACAAGGTGACTATCGCTGAGG
TAAAGAGGCGCCTCTCACCACCCGAGTGCCTCAATGCTTCACTTCTGGGAGGCATTCTGAGGAGAGCAAA
ATCCAAGAATGGTGGTCGTTGCCTGAGAGAAAAACTGGATAGGCTTGGCCTAAACTTGCCAGCTGGAAGA
CGGAAAGCAGCCAACGTTACCTTGCTCACTTCTTTAGTTGAAGGTGAGGCTTTGCACTTGGCTCGGGATT
TTGGCTACACGTGTGAAACCGAGTTTCCAGCCAAGGCAGTGGGAGAGCATCTCGCCAGACAACATATGGA
ACAGAAAGAACAGACTGCAAGAAAAAAGATGATCCTAGCCACCAAGCAAATTTGTAAAGAATTTCAAGAC
CTCCTGAGCCAGGATAGATCACCACTGGGATCCTCCAGACCCACTCCCATTCTAGACCTTGACATCCAGA
GGCACTTAACACATTTCAGTTTGATCACTCATGGTTTTGGGACACCAGCAATATGTGCAGCTCTAAGCAC
TTTCCAAACAGTCCTCAGTGAGATGCTTAACTACTTGGAAAAACACACTACTCACAAAAACGGTGGTGCG
GCAGACTCTGGCCAAGGACATGCCAACTCGGAGAAAGCCCCGCTGCGGAAAGCTTCAGAGGCTGCTGTGA
AAGAGGGCAAAACAGAAAAGACAGACTAG

Translation (452 aa):
MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLH
HQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAY
RRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDL
FCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGR
RKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQD
LLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGA
ADSGQGHANSEKAPLRKASEAAVKEGKTEKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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