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Report for CCDS28033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28033.1 Public Mus musculus 16 Or2m13 23 108 98 CCDS HistoryNCBI Gene:258458Re-query CCDS DB by CCDS ID:28033.1Re-query CCDS DB by GeneID:258458See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206410.2 ENSMUSP00000146100.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206410.2Link to Ensembl Protein Viewer:ENSMUSP00000146100.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000206410Re-query CCDS DB by Protein ID:ENSMUSP00000146100
Original member Current member NCBI NM_146466.1 NP_666677.1 Accepted alive Link to Nucleotide Sequence:NM_146466.1Link to Protein Sequence:NP_666677.1Re-query CCDS DB by Nucleotide ID:NM_146466Re-query CCDS DB by Protein ID:NP_666677Link to BLAST:NP_666677.1

Chromosomal Locations for CCDS 28033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19407076 19408017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGATGCAATGGAACAACTGGACCAGGAACTCTGATTTCATCCTACTAGGATTTTTTGATCACAGTCCTC
TTCATACTTTTTTCTTTTCTCTCATCCTGGCTATCTTCTTCATGGCCCTCATAGGAAATTCTGTCATGGT
GATTCTCATCTACCTGGATGCCCAACTCCACACCCCCATGTATATCCTTCTCAGCCAACTTTCTCTCATG
GATCTCATGCTCATCTCTACCACAGTACCCCAAACGGCCTTCAACTTCCTTTCTGGCAACAAGTCCATCT
CCATGGCTGGCTGTGGAGTCCAGATATTTTTCTATGTATCTCTACTTGGAGCTGAGTGTTTTTTATTGGC
TGCAATGGCCTATGACCGTTATGTAGCTATTTGTTACCCATTAAGGTACCCTATTCTCATGAGTCACAAA
ATCTGTAGTCTAATGGCTGCCTTCTCTTGGATTCTTGGCTCCCTTGATGGTATAATCGATGTTGCAGCTG
TACTATCTTTTTCATATTGTGGTACCAGAGAAATACCTCACTTTTTCTGTGATATCCCTGCCCTGCTAAC
TATTTCATGTAGTGATACCTTGATATTTGAAAAGATTATATTTTTCTGCTGTGTAATTATGCTTATCTTC
CCTGTAGTCATTGTTATTGCATCCTATATCTGTGTGATTCTTGCTGTCATTAAAATGGCTTCAGCTGAGA
GTCGTCACAAAGCTTTTGCCACCTGTTCATCTCACGTCATGGTGGTGGTAATATACTATGGGGCAGCCAT
GTTCATATACATGCAGCCCTCTTCTAGTCGTTCTCCCAATCAAGACAAACTAGTGTCAGCTTTCTACACC
ATTCTTACTCCACTGTTGAACCCCCTAATTTACAGCCTCCGCAACAAAGAAGTAGCCAGGGCATTCATGA
AGGTATTAAGGATGGATAAGGCAGCAGGATGA

Translation (313 aa):
MMQWNNWTRNSDFILLGFFDHSPLHTFFFSLILAIFFMALIGNSVMVILIYLDAQLHTPMYILLSQLSLM
DLMLISTTVPQTAFNFLSGNKSISMAGCGVQIFFYVSLLGAECFLLAAMAYDRYVAICYPLRYPILMSHK
ICSLMAAFSWILGSLDGIIDVAAVLSFSYCGTREIPHFFCDIPALLTISCSDTLIFEKIIFFCCVIMLIF
PVVIVIASYICVILAVIKMASAESRHKAFATCSSHVMVVVIYYGAAMFIYMQPSSSRSPNQDKLVSAFYT
ILTPLLNPLIYSLRNKEVARAFMKVLRMDKAAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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