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Report for CCDS17510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17510.1 Public Mus musculus 3 Pbxip1 23 108 98 CCDS HistoryNCBI Gene:229534Re-query CCDS DB by CCDS ID:17510.1Re-query CCDS DB by GeneID:229534See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038942.9 ENSMUSP00000040429.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038942.9Link to Ensembl Protein Viewer:ENSMUSP00000040429.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038942Re-query CCDS DB by Protein ID:ENSMUSP00000040429
Original member Current member NCBI NM_146131.2 NP_666243.1 Accepted alive Link to Nucleotide Sequence:NM_146131.2Link to Protein Sequence:NP_666243.1Re-query CCDS DB by Nucleotide ID:NM_146131Re-query CCDS DB by Protein ID:NP_666243Link to BLAST:NP_666243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666243.1 727 Q3TVI8 727 100% 0 0

Chromosomal Locations for CCDS 17510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89439551 89439601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89443122 89443248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89443452 89443516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89443596 89443755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89445452 89445679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89445792 89445815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89446091 89446173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89446280 89446411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89447046 89448265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89448673 89448766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGCCTCCTGCCCAGACTCAGATAATAGCTGGGTGCTCGCTGGTTCTGAGAATCTGCCTGTGGAGACTC
TGGGCCCAGAACCCAGGATGGACCCAGAATCTGAGGGAGCCTCCCAGGCCCTTCGGGACTCCTCCAAGGC
AGATGGCAAAGAATTAGCTGGGACCTTGGATGGAGAAGAGAAGCTTTTCCAGACGGAAAGTTCCCAGAGA
GAAACTGCTGTTCTGACAGAGTCTGCGGCCAAGGGCACTCTGGGAGCCGATGGTCATGGGACGGAGGCCC
CTGGAGACACAGTGGTCCAGGAAGATTCGCAGGAGACTCCTGTGGCGACGAGCCTCGGACCAGACACACA
GGACCTGGAGAGTGAGATCCATCCACAGAACTTACCCTCCAGTCCCAGAGCAGTTTGGAAAGAGCATCGC
TGCTCCAGCAGTGACGACGACACTGATGTAGATGTGGAGGGTCTGCGGAGACGGAGGGGCCGGGAGCCCA
GCTCATCCCAGCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCAAGGGCGAGGGTATAGGTGGAGAGCT
GGGCATCTCCCTCAACATGTGTTTCCTGGGGGCCCTGGTTCTTCTGGGCCTGGGGATCCTCCTGTTCTCT
GGTACACTGCTGGAGCCCGAGACTGGGCCCATGGAGGAAGCCGAGTTGCAGGTCTTTCCAGAAACCGGGC
CGGAGACTGAACTGGTAGAGACTCTGGGGAACAGGCAGGATGAGATAGAGCACCTGCAGGCTTCAAGTGT
CCCACCAGACAGTGTCCCCAGCCTGCAGAGCATGGGGTTTCTGCTGGACAAGCTGGCCAAGGAGAACCAG
GATATCCGGCTGCTGCAGGCTCAGCTACAGGCTCAGAAAGAAGAACTTCAGAGCCTGTTGCACCAGCCCA
AAGGGCTGGAGGAGGAGAATGCCCGGCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCT
AGAATCAGAACTGCAGCAGCTAAGGGCCCGACTCCAAGGGCTAGAGGCTAACTGTGTCCGGGGTGTAGAT
GGGGTGTGTCTCAACTGGGGTGGAGATCCACAGGATGGCAAGGCCACTAAAGAACAAGGCCACAAGGGGC
AGGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCAGCTTGAGGCGGAGGCCAAGGCCCTAAGGCAGGA
GCTGCAGAGACAGTGGCAGCTGCTGGGGTCTGTGCACTGGGACCTGCAGAGGGGCTTGCGGGATGCTGGC
CGGGGAGCCCCAGCTCACCCTGGCCTGGCTGAACTCGGTCACATGTTGGCCCAGACACTGCAGGACCTCG
AGAATCAGGGTATCAACACTGGCAGGTCCCCCAATGACTCGGAGGCCTGGCACCAGAAGAAGCCTCACAC
CCAGAGTCCCAGGGAGTGGGGTGGGAAGGAGAAGTGGCGCGGTGGGCAGAGGGATCAGAAGGCTGAGCAC
TGGAAGCCGAGGAAGGAGGAGTCTGGCCAGGAGAGGCAAAGGAGCTGGAGGGATGAGGGCCGGGAGCACA
CTGGGCGCTGGAGGGAGGACAGACTGCGGGCGGACGAATCTGGGAGCAGAAAGGACAGCAAGCGACAGGA
CCCCAAGGTACACCCTAGGAAAGATGGGAACTCCCATTCTGTAGAAAGGCAGAAGCATTCTTGGGGGAAA
GACAACAGCCCTGACGCCCTGTCCTCCTGGGAGGAGCTGCTGAGGCGCAAGTACCGACCCCCTCAGGGCT
GTTCAGGTGTGGCCGACTGTGCCCGGCAGGAGGGCCTGGCCCTCTTTGGTGTGGAGCTGGCCCCTGTGCG
GCAGCAGGAGCTGGCCTCTGTGCTGAGAGAATACTTGTCTCGGCTGCCCTGGGCCGGGCAGCTGACCAAA
CAGCTGCCCCTCTCACCTGCTTACTTTGGAGAAGATGGCATCTTCAGGCATGACCGGCTTCGCTTCAGAG
ATTTTGTGGATGCCTTGGAGGACAGCCTGGAGGAGGTGGCACTGAAACAGACAGGCGACGATGATGAAGT
GGATGACTTTGAGGACTTTGTCTTCGGCCACTTCTTTGGGGACAAGGCCCTGAAGAAGAGGTCACGAAAG
AAGGAGAAGCACTCCTGGAACCCCAGAGTTGTGGGGCCCAGGGAAGAGCACAGCCGCCATCCGCACCACT
ACCACCAAGGCTGA

Translation (727 aa):
MASCPDSDNSWVLAGSENLPVETLGPEPRMDPESEGASQALRDSSKADGKELAGTLDGEEKLFQTESSQR
ETAVLTESAAKGTLGADGHGTEAPGDTVVQEDSQETPVATSLGPDTQDLESEIHPQNLPSSPRAVWKEHR
CSSSDDDTDVDVEGLRRRRGREPSSSQPVVPVDVEDQAKGEGIGGELGISLNMCFLGALVLLGLGILLFS
GTLLEPETGPMEEAELQVFPETGPETELVETLGNRQDEIEHLQASSVPPDSVPSLQSMGFLLDKLAKENQ
DIRLLQAQLQAQKEELQSLLHQPKGLEEENARLREALQQGKTSHQALESELQQLRARLQGLEANCVRGVD
GVCLNWGGDPQDGKATKEQGHKGQEPDPSLLEQHKQLEAEAKALRQELQRQWQLLGSVHWDLQRGLRDAG
RGAPAHPGLAELGHMLAQTLQDLENQGINTGRSPNDSEAWHQKKPHTQSPREWGGKEKWRGGQRDQKAEH
WKPRKEESGQERQRSWRDEGREHTGRWREDRLRADESGSRKDSKRQDPKVHPRKDGNSHSVERQKHSWGK
DNSPDALSSWEELLRRKYRPPQGCSGVADCARQEGLALFGVELAPVRQQELASVLREYLSRLPWAGQLTK
QLPLSPAYFGEDGIFRHDRLRFRDFVDALEDSLEEVALKQTGDDDEVDDFEDFVFGHFFGDKALKKRSRK
KEKHSWNPRVVGPREEHSRHPHHYHQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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