NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29590.1 Public Mus musculus 19 Tmem109 23 108 98 CCDS HistoryNCBI Gene:68539Re-query CCDS DB by CCDS ID:29590.1Re-query CCDS DB by GeneID:68539See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038128.14 ENSMUSP00000039529.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038128.14Link to Ensembl Protein Viewer:ENSMUSP00000039529.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038128Re-query CCDS DB by Protein ID:ENSMUSP00000039529
Original member Current member NCBI NM_134142.1 NP_598903.1 Accepted alive Link to Nucleotide Sequence:NM_134142.1Link to Protein Sequence:NP_598903.1Re-query CCDS DB by Nucleotide ID:NM_134142Re-query CCDS DB by Protein ID:NP_598903Link to BLAST:NP_598903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598903.1 243 Q3UBX0 243 100% 0 0

Chromosomal Locations for CCDS 29590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10871758 10872149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10872587 10872689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10874242 10874478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCAGGCGCACACAGCACTCCGTTATGGAGCAGACATCTGCTCAAAGCTGTCCTGATGGTCCTCGTGG
CCCTTTTCCTCGTCCACTCCGCATCAGCCCAGTCTCATCGAGAGTTTGCCTCACCTGGTCAACAGAAGAA
GGAGACCTCAGCTGATATTTTGACCCAGATTGGCCGATCTCTGAAGGAGATGTTGGATACCTGGCTAGGG
CCAGAGACCATGCATGTGATTTCAGAGACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTG
TGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGGTGAACAACT
CACCCAGGGCTTGAAGCTCAGCCCTAGCCAAGTCCAGACCCTTCTACTGTGGGGAGCAGCAGCACTGGTC
ATCTACTGGTTGCTGTCCCTGCTCCTAGGCTTGGTCTTGGCCTTGCTAGGGAGGATCCTGGGGGGTCTGA
AACTTGTTCTTTTTGTCGCTGGCTTTGTGGCCCTGGTGAGGTCTGTGCCCGACCCATCTACCCGGGCCTT
GATGCTCTTGGCCTTGTTAACTCTCTTTGCCTTGCTGAGCCGGCTCACTGGCTCCAGGAGCTCAGGGAGC
CACCTGGAAGCCAAGGTGAGAGGGCTGGAGCGCCAGATAGAAGAGCTTAGAGGGAGGCAGAGGCGAGCAG
CCAAGATGCCCAGGAGCATGGAAGAAGAGTGA

Translation (243 aa):
MAGAHSTPLWSRHLLKAVLMVLVALFLVHSASAQSHREFASPGQQKKETSADILTQIGRSLKEMLDTWLG
PETMHVISETLLQVMWAISSAISVACFALSGIAAQLLSALGLDGEQLTQGLKLSPSQVQTLLLWGAAALV
IYWLLSLLLGLVLALLGRILGGLKLVLFVAGFVALVRSVPDPSTRALMLLALLTLFALLSRLTGSRSSGS
HLEAKVRGLERQIEELRGRQRRAAKMPRSMEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH