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Report for CCDS20030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20030.1 Public Mus musculus 6 Ssbp1 23 108 98 CCDS HistoryNCBI Gene:381760Re-query CCDS DB by CCDS ID:20030.1Re-query CCDS DB by GeneID:381760See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031971.12 ENSMUSP00000031971.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031971.12Link to Ensembl Protein Viewer:ENSMUSP00000031971.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031971Re-query CCDS DB by Protein ID:ENSMUSP00000031971
Original member Current member NCBI NM_028358.2 NP_082634.1 Accepted alive Link to Nucleotide Sequence:NM_028358.2Link to Protein Sequence:NP_082634.1Re-query CCDS DB by Nucleotide ID:NM_028358Re-query CCDS DB by Protein ID:NP_082634Link to BLAST:NP_082634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082634.1 152 Q9CYR0 152 100% 0 0

Chromosomal Locations for CCDS 20030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40472110 40472133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40474665 40474725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40476367 40476507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40476748 40476835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40477923 40478067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTT
TGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACA
GGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGT
GAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCC
TCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGG
CGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGGTAAGAAGCTCGTGGTG
CACAGTGTCTCTGGTTGTTCATTGGAAGGGTTGGCGTAG

Translation (152 aa):
MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDS
EVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQATTIIAGKKLVV
HSVSGCSLEGLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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