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Report for CCDS23217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23217.1 Public Mus musculus 9 Neil1 23 108 98 CCDS HistoryNCBI Gene:72774Re-query CCDS DB by CCDS ID:23217.1Re-query CCDS DB by GeneID:72774See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034842.4 ENSMUSP00000034842.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034842.4Link to Ensembl Protein Viewer:ENSMUSP00000034842.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034842Re-query CCDS DB by Protein ID:ENSMUSP00000034842
Original member Current member EBI ENSMUST00000190245.6 ENSMUSP00000139917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190245.6Link to Ensembl Protein Viewer:ENSMUSP00000139917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190245Re-query CCDS DB by Protein ID:ENSMUSP00000139917
Original member Current member EBI ENSMUST00000186410.6 ENSMUSP00000141048.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186410.6Link to Ensembl Protein Viewer:ENSMUSP00000141048.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186410Re-query CCDS DB by Protein ID:ENSMUSP00000141048
Original member Current member NCBI NM_028347.3 NP_082623.1 Accepted alive Link to Nucleotide Sequence:NM_028347.3Link to Protein Sequence:NP_082623.1Re-query CCDS DB by Nucleotide ID:NM_028347Re-query CCDS DB by Protein ID:NP_082623Link to BLAST:NP_082623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082623.1 389 Q8K4Q6-1 389 100% 0 0

Chromosomal Locations for CCDS 23217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57143256 57143326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57143451 57143613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57143758 57143819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57143979 57144006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57144187 57144314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57144638 57144737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57144945 57145008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57145098 57145217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57146601 57147034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCCAGAGGGCCCAGAGCTGCACCTGGCCAGCCACTTTGTGAATGAGACATGTAAGGGGCTGGTATTTG
GTGGGTGTGTGGAGAAGTCCTCTGTCAGCCGGAACCCGGAGGTGCCCTTTGAGAGCAGTGCCTACCACAT
CTCAGCTTTAGCCCGAGGCAAGGAGCTGCGCTTGACATTGAGCCCCCTGCCTGGGTCCCAGCCCCCTCAG
AAGCCACTGTCCCTTGTCTTCCGCTTTGGGATGTCAGGATCCTTCCAGCTGGTACCCGCAGAGGCACTGC
CCCGCCACGCCCATCTACGTTTTTACACAGCCCCACCTGCTCCCCGGCTTGCCCTTTGCTTCGTAGACAT
CCGTCGCTTTGGCCACTGGGATCCTGGGGGTGAATGGCAACCAGGCCGTGGACCCTGTGTCTTGCTGGAG
TATGAACGGTTCAGAGAGAACGTACTTCGGAACCTATCAGACAAAGCCTTTGACCGGCCCATCTGTGAGG
CCTTGTTGGACCAGAGGTTCTTCAATGGCATTGGCAACTATCTGCGGGCAGAGATCCTGTACCGGCTGAA
GATCCCTCCTTTTGAGAAGGCTCGTACAGTTCTAGAGGCCCTGCAACAGTGCCGGCCGAGCCCAGAGCTG
ACCCTGAGCCAGAAGATCAAGGCCAAACTACAGAACCCAGACCTGCTGGAACTGTGTCACTTGGTGCCCA
AGGAAGTGGTTCAGCTGGGGGGCAAAGGCTATGGGCCAGAGCGTGGAGAGGAGGATTTTGCTGCCTTTCG
AGCCTGGCTTCGGTGCTATGGTGTGCCAGGCATGAGCTCCCTGCGAGACCGGCATGGCCGTACCATCTGG
TTCCAGGGTGATCCCGGACCCTTGGCACCCAAAGGGGGCAGATCCCAAAAAAAGAAGTCACAGGAGACAC
AGCTGGGGGCTGAGGACAGGAAAGAGGACCTTCCACTTTCAAGCAAGTCCGTTTCCAGGATGCGGAGGGC
CAGGAAGCACCCTCCTAAGAGAATAGCTCAACAGTCTGAAGGGGCCGGCCTCCAACAAAACCAGGAAACC
CCTACAGCTCCTGAGAAAGGGAAGAGGAGGGGGCAACGGGCGAGCACAGGCCACCGCAGACGCCCAAAGA
CTATACCTGACACCCGACCCAGGGAGGCTGGGGAGAGTTCAGCTTCATAG

Translation (389 aa):
MPEGPELHLASHFVNETCKGLVFGGCVEKSSVSRNPEVPFESSAYHISALARGKELRLTLSPLPGSQPPQ
KPLSLVFRFGMSGSFQLVPAEALPRHAHLRFYTAPPAPRLALCFVDIRRFGHWDPGGEWQPGRGPCVLLE
YERFRENVLRNLSDKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARTVLEALQQCRPSPEL
TLSQKIKAKLQNPDLLELCHLVPKEVVQLGGKGYGPERGEEDFAAFRAWLRCYGVPGMSSLRDRHGRTIW
FQGDPGPLAPKGGRSQKKKSQETQLGAEDRKEDLPLSSKSVSRMRRARKHPPKRIAQQSEGAGLQQNQET
PTAPEKGKRRGQRASTGHRRRPKTIPDTRPREAGESSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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