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Report for CCDS29065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29065.1 Public Mus musculus 18 Ttc39c 23 108 98 CCDS HistoryNCBI Gene:72747Re-query CCDS DB by CCDS ID:29065.1Re-query CCDS DB by GeneID:72747See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234966.1 ENSMUSP00000157144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234966.1Link to Ensembl Protein Viewer:ENSMUSP00000157144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234966Re-query CCDS DB by Protein ID:ENSMUSP00000157144
Original member NCBI NM_028341.4 NP_082617.2 Updated not alive Link to Nucleotide Sequence:NM_028341.4Link to Protein Sequence:NP_082617.2Re-query CCDS DB by Nucleotide ID:NM_028341Re-query CCDS DB by Protein ID:NP_082617
Current member NCBI NM_028341.5 NP_082617.2 Accepted alive Link to Nucleotide Sequence:NM_028341.5Link to Protein Sequence:NP_082617.2Re-query CCDS DB by Nucleotide ID:NM_028341Re-query CCDS DB by Protein ID:NP_082617Link to BLAST:NP_082617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082617.2 580 Q8VE09 580 99.8276% 0 1

Chromosomal Locations for CCDS 29065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12643886 12644043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12684837 12684885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12686952 12687080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12689773 12689887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12695236 12695590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12697891 12698059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12719950 12720043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12724939 12725046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12728620 12728729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12729994 12730117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12732958 12733055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12734887 12734991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12735980 12736018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12736674 12736763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGCCGGCTCGGAGGAGCAGTGGCCGCGGCGGAGGGAGGACGGCGACCCGGACGCCGCAGCGGCGCCCC
TGCAGGACGCGGAGCTGGCCTTGGCTGGCATCAATATGCTTCTCAACAACGGCTTCAGGGAGTCGGATCA
GCTTTTCAAACAATACAGAAATCATAGTCCACTAATGAGTTTTGGAGCCAGCTTCGTCAGCTTTTTGAAC
GCCATGATGACATTCGAGGAGGAGAAAATGCAGTTGGCGTGCGATGACTTAAAGACTACAGAGAAGCTGT
GTGAGAGTGAAGAGGCTGGTGTAATCGAAACAATTAAGAACAAAATTAAGAAGAACGTTGATGCCCGGAA
ATCCACCCCCTCCATGGTCGATCGACTTCAGAGGCAGATCATCATCGCTGACTGCCAGGTTTACCTGGCA
GTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTACATAAAAGGTGGGTGGATCCTTAGGAAAGCCTGGA
AGATTTACAGTAAGTGCTATGTGGACATCAACGCCCTTCAGGAACTGTATCAGAAGAAGCTGACGGAAGA
GCCCTTGGCTTCTGATGCTGCAAATGATAACCACGTTGTGGCCGAAGGGGTGACCGAGGAGTCCTTAAGC
AGACTGAAAGGGGCTGTGAGCTTTGGATATGGCCTTTTCCACCTTTGCATATCCATGGTGCCCCCAAACC
TGCTCAAAATCATCAACCTGCTGGGCTTTCCTGGAGACCGCCTACAGGGCCTTTCTTCACTGACGTATGC
GAGCGAAAGTAAGGACATGAAGGCCCCTTTAGCTACATTAGCCCTGCTGTGGTACCACACTGTGGTCCGC
CCATTTTTTGCTTTGGACGGCAGTGACAACAAAGGGGGCTTGGATGAAGCTAAGGCAATTCTTCTCAGAA
AGGAATCTGCTTACCCCAACTCTTCCCTCTTCATGTTTTTCAAGGGACGGATCCAGCGGTTAGAGTGTCA
AATCAACAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCTGGCTGTGGACCAGAGGGAGATCCAGCAC
GTCTGTCTGTATGAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCCTTCG
AGAGGCTGAAGAACGAGTCCCGGTGGTCCCAGTGCTACTACGCATATCTGACTGCAGTTTGTCAGGGAGC
CACTGGTGATGTGGATGGGGCACAACTTGTTCTTAAAGAAGTCCAGAAGCTGTTCAAAAGGAAAAACAAC
CAGATTGAACAGTTTTCTGTGAAGAAGGCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGTG
TGCTGGCCTCCATTGAAGTGCTCTACTTGTGGAAAGCCCTTCCAAACTGCTCCTTCCCCAACCTGCAGAG
GATGAGTCAAGCTTGCCATGAAGTGGACGATTCATCTGTCGTTGGATTAAAGCATTTGCTCCTTGGTGCC
ATACACAAATGTCTAGGAAACTCACAAGATGCTCTTCAGTTCTTCCAGCGAGCTGCTAGAGATGAGCTAT
GTCGGCAGAGTAACTCGTACGTCCCGCCATATGCGTGCTATGAGCTTGGCTGTCTCCTACTGGACAGCGC
AGAGACTGTGGGAAGAGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTTTTCTGGCTACGACTTTGAA
AACAGATTGCACGTCCGCATCCACGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGA

Translation (580 aa):
MAGSEEQWPRRREDGDPDAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLN
AMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDARKSTPSMVDRLQRQIIIADCQVYLA
VLSFVKQELSAYIKGGWILRKAWKIYSKCYVDINALQELYQKKLTEEPLASDAANDNHVVAEGVTEESLS
RLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLTYASESKDMKAPLATLALLWYHTVVR
PFFALDGSDNKGGLDEAKAILLRKESAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQH
VCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQLVLKEVQKLFKRKNN
QIEQFSVKKAERFRKQTPTRALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDSSVVGLKHLLLGA
IHKCLGNSQDALQFFQRAARDELCRQSNSYVPPYACYELGCLLLDSAETVGRGRTLLLQAKEDFSGYDFE
NRLHVRIHAALASLRELVPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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