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Report for CCDS25253.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25253.2 Public Mus musculus 11 Ankrd40 23 108 98 CCDS HistoryNCBI Gene:71452Re-query CCDS DB by CCDS ID:25253.2Re-query CCDS DB by GeneID:71452See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25253.2
The coding region has been updated to represent an alternative 3' splice site, resulting in a longer and distinct C-terminus that is better supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25253.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107818.8 ENSMUSP00000103448.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107818.8Link to Ensembl Protein Viewer:ENSMUSP00000103448.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107818Re-query CCDS DB by Protein ID:ENSMUSP00000103448
Original member Current member NCBI NM_027799.2 NP_082075.2 Accepted alive Link to Nucleotide Sequence:NM_027799.2Link to Protein Sequence:NP_082075.2Re-query CCDS DB by Nucleotide ID:NM_027799Re-query CCDS DB by Protein ID:NP_082075Link to BLAST:NP_082075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082075.2 363 Q5SUE8-1 363 100% 0 0

Chromosomal Locations for CCDS 25253.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94328254 94328387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94333901 94334049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94334428 94334907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94338340 94338521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94339553 94339699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGAGCGCCCTCCTAGAGCAGAAGGAGCAGCAGGAGAGGCTGCGGGAGGCGGCGGCCTTGGGGGACATTC
GGGAGGTGCAGAAACTGGTGGAGAGCGGGGTGGATGTGAACTCGCAAAATGAGGTCAACGGCTGGACCTG
TTTACACTGGGCATGTAAACGCAACCATGGACAGGTGGTGTCCTACCTGCTACAATCAGGAGCTGACAGA
GAGATTCTTACAACAAAAGGGGAAATGCCGGTACAACTAACATCAAGGAGAGAAATCAGGAAGATTATGG
GAGTGGAAGAAGCCGATGAGGAGGAGGAGATCCCTCAGCTGAAGAAGGAGTCAGAACTGCCCTTTGTCCC
CAACTATCTGGCCAACCCAGCTTTCCCTTTTATCTACACCCCTGCAGCAGAAGACTCCACCCAATTGCAG
AATGGGGGCCCCTCCCCACCTCCAGTGTCACCTCCTGCAGATAGCTCACCTCCATTGCTCCCCCCCACAG
AAACCCCTTTGCTAGGGGCCTTTCCTAGGGACCACAGCTCTTTGGCATTGGTCCAGAATGGTGATATTTC
TGCCCCCTCTGCCATACTTAGAACACCAGAAAGCACAAAACCTGGTCCTGTCTGTCAGCCACCAGTGAGT
CAGAACCGCTCCCTGTTCTCTGTCCCATCCAAGCCCCCGGTGTCTCTGGAGCCTCAGAACGGGACGTATG
CAGGCCCGGCGCCAGCATTCCAGCCATTTTTCTTCACCGGAGCATTTCCATTTAATATGCAAGAGCTGGT
ACTCAAAGTGAGGATTCAGAATCCATCTCTTCGTGAAAATGACTTCATTGAAATTGAACTGGATCGACAG
GAACTCACCTACCAAGAACTGCTGAGAGTGAGCTGCTGTGAGCTGGGTGTTAATCCAGACCAAGTGGAAA
AGATAAGAAAGTTACCCAACACTCTGTTAAGAAAGGACAAAGATGTTGCCCGACTCCAGGACTTCCAGGA
GCTGGAACTGGTTCTGATGATAAGTGACAATAATTTTCTGTTTAGAAACGCTGCATCCACACTGACTGAG
AGGCCTTGCTATAACCGGAGAGCTTCAAAACTGACGTACTGA

Translation (363 aa):
MSALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLQSGADR
EILTTKGEMPVQLTSRREIRKIMGVEEADEEEEIPQLKKESELPFVPNYLANPAFPFIYTPAAEDSTQLQ
NGGPSPPPVSPPADSSPPLLPPTETPLLGAFPRDHSSLALVQNGDISAPSAILRTPESTKPGPVCQPPVS
QNRSLFSVPSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELDRQ
ELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELELVLMISDNNFLFRNAASTLTE
RPCYNRRASKLTY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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