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Report for CCDS24675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24675.1 Public Mus musculus 11 Zcchc10 23 108 98 CCDS HistoryNCBI Gene:67966Re-query CCDS DB by CCDS ID:24675.1Re-query CCDS DB by GeneID:67966See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018383.9 ENSMUSP00000018383.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018383.9Link to Ensembl Protein Viewer:ENSMUSP00000018383.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018383Re-query CCDS DB by Protein ID:ENSMUSP00000018383
Original member Current member NCBI NM_026479.4 NP_080755.2 Accepted alive Link to Nucleotide Sequence:NM_026479.4Link to Protein Sequence:NP_080755.2Re-query CCDS DB by Nucleotide ID:NM_026479Re-query CCDS DB by Protein ID:NP_080755Link to BLAST:NP_080755.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080755.2 178 Q9CX48 178 100% 0 0

Chromosomal Locations for CCDS 24675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53324701 53324741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53327269 53327427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53330687 53330731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53332302 53332593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGCGACTCCCATGCATCGGCTCATAGCTCGAAGGAAAGCTGAAGCCAATAAGCAACATGTAAGATGTC
AGAAATGCTTGGAATTTGGACATTGGACTTATGAATGCAAAGGGAAAAGAAAGTACCTACACAGACCTTC
GAGAACGGCAGAGCTGAAGAAAGCTTTAAAAGAAAAAGAAAATAGATTATTGCTGCAAAGCATAGGAGAG
ACCAACATAGAGAAAAAGATCAAGAAGAAGAAGAGGTCTAAGAGTGTCACGAGTTCCAGTACCTCTAGCA
GTGACAGTTCGGCCAGTGAGTCTTCATCAGAGAGTGAGACATCCGCCTCATCCTCTTCAGAAGACAGTGA
CTCAGATGAAAGCCTCTCTAGCTCCTCCTCCTCCTCCTCTTCCTCGGCCTGTTCGTCTTCCTCTTCCTCC
TCTTCCTCCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGA
GCAGCTCTGATGATGAGCCACAGAAGAAGAAAAAGAAGAAGAAATAG

Translation (178 aa):
MATPMHRLIARRKAEANKQHVRCQKCLEFGHWTYECKGKRKYLHRPSRTAELKKALKEKENRLLLQSIGE
TNIEKKIKKKKRSKSVTSSSTSSSDSSASESSSESETSASSSSEDSDSDESLSSSSSSSSSSACSSSSSS
SSSSSSSDSDSSSSSSSSSSSSESSSDDEPQKKKKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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